Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0310
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    24   1.8  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.3  

>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 225 YRVSEVVNCNDLMXGFQQC 169
           Y V E VN  DLM   QQC
Sbjct: 61  YFVMEYVNGGDLMYQIQQC 79


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 251 KAGDPSSSSTELVKLSIAMTSXPASSSVTT 162
           KAG   +S+   V  + A T+ PA+S+  T
Sbjct: 207 KAGSTDASTPATVTTTGATTTLPAASATGT 236


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = +3

Query: 486 GVLVVMYSLRRT*TLADHGDSXHWKYHKCLRQNEVLHRG 602
           G L ++Y+ +RT T+    D   W   +   Q  ++  G
Sbjct: 166 GELAILYNCKRTATITAATDCQLWAIDRQCFQTIMMRTG 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,098
Number of Sequences: 438
Number of extensions: 3421
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)