Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0309
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.0  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   8.0  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   8.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.0  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 15/72 (20%), Positives = 29/72 (40%)
 Frame = +3

Query: 129 VIEATAEQSQNETVEEVKTPSEANEDKTPETPVTEPITNGHSTPETPQVETLAADQPVEH 308
           V+E   E+  ++   E +   E  EDK  + P  E +  G    E  + E     + ++ 
Sbjct: 214 VVEKEREKELSDDEAEEEKKEEEGEDKDKDKPKIEDV--GEDEDEDTKKEDKKKKKTIKE 271

Query: 309 VVNPDADKTESK 344
               D +  ++K
Sbjct: 272 KYTEDEELNKTK 283


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 397 DCSKESPLTGNCSGSGSALDSVLSASGLTTCST 299
           D  K   LTG+ +G G A  +  S S     ST
Sbjct: 37  DGGKPPELTGSTNGDGGARSNADSTSHTDGAST 69


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 397 DCSKESPLTGNCSGSGSALDSVLSASGLTTCST 299
           D  K   LTG+ +G G A  +  S S     ST
Sbjct: 193 DGGKPPELTGSTNGDGGARSNADSTSHTDGAST 225


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 9/30 (30%), Positives = 12/30 (40%)
 Frame = +3

Query: 183 TPSEANEDKTPETPVTEPITNGHSTPETPQ 272
           TP+ A     PE     P      TP +P+
Sbjct: 38  TPNSAASPAPPEEEAASPTPGDVPTPSSPR 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,751
Number of Sequences: 336
Number of extensions: 2657
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)