Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0308
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical ...    28   5.6  
AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AL032630-9|CAA21565.1|  369|Caenorhabditis elegans Hypothetical
           protein Y62H9A.9 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 469 LMRSRKPTNIFLKKTIIFDSLVKENTY-KLTSNQEC 365
           L+R+ +PT+I+ KK ++F    +  TY  L  N  C
Sbjct: 149 LVRTNRPTDIYKKKYLLFPVSFRAETYCTLVVNPHC 184


>AF077546-4|AAC26317.2|  704|Caenorhabditis elegans Hypothetical
           protein T08E11.4 protein.
          Length = 704

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 667 MQEWKLLN*NYKKPLFRGFQTVYVKSIKNDYRITD 563
           M+ WK     + KP  RGF+ +  K +++DY + D
Sbjct: 489 MKNWKY---TFAKPTGRGFEFISWKELESDYVVDD 520


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,785,077
Number of Sequences: 27780
Number of extensions: 263758
Number of successful extensions: 586
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 586
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)