Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0308
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   1.2  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
 Frame = +1

Query: 124 CHRFLISGNDVKVVVASLYPTALSDASEVFRALSG--FKVRNRSLYRDRSGMYANVSRTV 297
           C + +I+G  V    A  YP     A+ V  A+    F + +R ++R     Y N+  T 
Sbjct: 312 CVQAMIAGIVVISAGADAYPPL---AAIVLGAIGSIVFYIISRYVFRSALEDYCNIVATH 368

Query: 298 SGCGVSGELFWSF 336
             CG+ G +   F
Sbjct: 369 LVCGILGSILVPF 381


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 21/104 (20%), Positives = 41/104 (39%), Gaps = 2/104 (1%)
 Frame = -3

Query: 572 YNRLTLTVPRHLVRT*SER*S-LTESKVFGDDDIEVNEVKKTDKYLFKKNDYIR*SS*RK 396
           +N L   VP+H           + E K+F  +   + ++++  ++L K   +    +   
Sbjct: 244 FNTLVDLVPKHACAEYRRNFKKMQEEKIF--EPHRIPQLQEVSEFLKKNTGFTLRPAAGL 301

Query: 395 YIQIDFESGVXXXXXXXXXXXXXKSSP-DTPQPDTVRDTLAYIP 267
               DF S +               SP  TP+PD + + L ++P
Sbjct: 302 LTSRDFLSSLAFRVFQSTQYIRHIKSPYHTPEPDCIHELLGHMP 345


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = -1

Query: 475 LKLMRSRKPTNIFLKKTIIFDSLVKENTYKLTSNQECY*NGSVLNY*NSRKVHPTLHNLT 296
           LK + S  PT    + T   D     NT +L   Q    NG V+++ N    H     L 
Sbjct: 413 LKCVASGNPTP---EITWELDGKRLSNTERLQVGQYVTVNGDVVSHLNISSTHTNDGGLY 469

Query: 295 QCV 287
           +C+
Sbjct: 470 KCI 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,051
Number of Sequences: 438
Number of extensions: 3289
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)