Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0307
         (749 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       24   1.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.5  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    23   2.6  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    22   4.6  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 522 ALADRMRRELAKFRDSRWEDNWDT 593
           +  + +  E AKF +S+W+D+ ++
Sbjct: 99  SFGNNLHSEKAKFNESKWQDSGES 122


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +2

Query: 191  WRSTTGTSRWLRTTPCLEHPNTRNRMKLSRKLPLLSMW 304
            W S+T TS W  TT       TR     +   P  + W
Sbjct: 1042 WWSSTTTSPWWTTTTTRRTTTTRPTTTSTTTRPTTTNW 1079


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 505 SGKPVNQFTTNLASSSPVLN 446
           SGKP    +TN +  SP+L+
Sbjct: 121 SGKPSGVISTNTSPPSPILS 140


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 491 EPVHDQFGELVAGLEREAVDAVLHQLVQACKASIKRVKS 375
           +  H Q G+LV GL       ++H LV     + + VK+
Sbjct: 238 QSTHHQ-GQLVVGLPAPTSSIMMHHLVNPQSLNHQEVKA 275


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,847
Number of Sequences: 336
Number of extensions: 2903
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)