Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0307
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    52   7e-08
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    27   3.8  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   5.0  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    26   6.6  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.6  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 52.4 bits (120), Expect = 7e-08
 Identities = 40/132 (30%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
 Frame = +1

Query: 10  LNRXHMLVRMARSTERFFGQSSHFNLCVTYAMKEDLLQNWNINAA-VLYDRPPKIFKPLT 186
           L + H  V++ +  E++  + ++ +L V+  MK D+LQ W +N   V YDRPP  F P+ 
Sbjct: 165 LGKQHTFVKLLKIYEKYMARGAYAHLTVSKRMK-DVLQTWGMNPCYVCYDRPPNHFTPI- 222

Query: 187 LLEKHDWYVKMAQNYPMFGASKHEKPNEAFEKTAFTEYVDGVLKPRPDRPGIIFSSTSWT 366
                                K+E+  +   K    EY        P    ++ +STSWT
Sbjct: 223 ---------------------KNEQKKQMSIKKIPCEY-------NPSSTKLLITSTSWT 254

Query: 367 PDEDFTLLMEAL 402
           PDED  +L EAL
Sbjct: 255 PDEDIYILWEAL 266


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 183 QWLEYLRWPVVKDSSIDVP 127
           +W +Y  W V KD +I+ P
Sbjct: 116 EWFDYFAWTVPKDPNINTP 134


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = -3

Query: 279 LESFIRFLVFGCSKHGVVLSHLDVPVVLLQQRQWLEYLRWPVVKDSSIDVPILQQ 115
           LE F+R LV       + L   D  V ++   QW++YLR  V+  +S   P++Q+
Sbjct: 364 LEMFVRLLV------AIFLKDRDKIVNMVSHEQWVKYLRSDVL--ASYRQPLVQK 410


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 321 WFQNAVHILSKGSFLESFIR-FLVFGCS 241
           W  NA  +LSK S L+SF R +L   CS
Sbjct: 362 WIPNAYGLLSKHSHLQSFCRDWLRIVCS 389


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -3

Query: 396  FHQESEIFIRSPAGAAEDDAGSIGSW 319
            +H ++ IF+ +P G+ +  A  + +W
Sbjct: 1147 YHTDTNIFVGAPTGSGKTMAAELATW 1172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,322
Number of Sequences: 5004
Number of extensions: 48228
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)