Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0307
(749 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 75 5e-14
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 38 0.011
03_01_0481 - 3683912-3684694,3684811-3685107,3685199-3685414,368... 31 0.98
03_05_0862 + 28353235-28354431 30 2.3
03_05_0904 + 28658251-28659288 29 3.9
02_05_0439 + 29014323-29014853,29014958-29015341,29015422-290155... 29 3.9
03_06_0365 - 33399422-33399925,33400470-33400583,33400762-334009... 28 6.9
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 28 6.9
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 75.4 bits (177), Expect = 5e-14
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Frame = +1
Query: 16 RXHMLVRMARSTERFFGQSSHFNLCVTYAMKEDLLQNWNINAAVLYDRPPKIFKPLTLLE 195
R H++V++ E+ FG+ + CVT AMK +L Q W IN + K L +
Sbjct: 152 RSHIIVKIYFWFEKHFGRMADGAFCVTKAMKHELDQKWGINHS----------KYLIAVR 201
Query: 196 K-HDWYVKMAQNYPMFGASKHEKPNEAFEKTAFTEYVDGVLKPRPDRPGIIFSSTSWTPD 372
K H V +Y EK E T FT +VDG + +P+RP ++ SSTSWTPD
Sbjct: 202 KFHFDIVSTVCSY------NTEKEVEDRNTTVFTSWVDGEIFLKPNRPALVVSSTSWTPD 255
Query: 373 EDFTLLMEA 399
EDF++L+EA
Sbjct: 256 EDFSILLEA 264
Score = 37.1 bits (82), Expect = 0.015
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = +3
Query: 396 SLTSLDELVEDGVNGFTFKTGDELAKLVVNWFTGFPDNPEQIALADRMRRELAKFRDSRW 575
S + +DELV+ NG F T ELA ++ F GFP+ + L L S+W
Sbjct: 380 SFSCIDELVKINNNGLLFSTSSELADELMMLFKGFPEECDD--LKSLKVGALNTGSSSKW 437
Query: 576 EDNWDTRA 599
W+ A
Sbjct: 438 STEWERYA 445
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 37.5 bits (83), Expect = 0.011
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 16 RXHMLVRMARSTERFFGQSSHFNLCVTYAMKEDLLQNWNINA 141
R H++V++ E+ FG+ + CVT AMK +L + W INA
Sbjct: 152 RSHIIVKIYFWFEKHFGRMADGAFCVTKAMKHELDKKWGINA 193
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/68 (32%), Positives = 31/68 (45%)
Frame = +3
Query: 396 SLTSLDELVEDGVNGFTFKTGDELAKLVVNWFTGFPDNPEQIALADRMRRELAKFRDSRW 575
S + +DELV+ NG F T ELA + F GFP+ ++ L L S+W
Sbjct: 342 SFSCIDELVKVNNNGLLFSTSSELADELTMLFKGFPEECDE--LKSLKVGALNTGSSSKW 399
Query: 576 EDNWDTRA 599
W+ A
Sbjct: 400 STEWERYA 407
>03_01_0481 -
3683912-3684694,3684811-3685107,3685199-3685414,
3685503-3685829
Length = 540
Score = 31.1 bits (67), Expect = 0.98
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +3
Query: 411 DELVEDGVNGFTFKTGDELAKLVVNWFTGFPDNPEQIALADRMRRELAKFRDSR 572
D+ + D V F G + ++WFT A+AD++RRELA F D R
Sbjct: 307 DKSLRDVVLNFVI-AGRDTTATTLSWFTYMAMTHP--AVADKLRRELAAFEDER 357
>03_05_0862 + 28353235-28354431
Length = 398
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 280 KTAFTEYVDGVLKPRPDRPGIIFSSTSWTPDE 375
+ A +VDG +PRPDRP ++ + + PD+
Sbjct: 35 RAAAAIFVDGRGRPRPDRPWLLLPADAPDPDD 66
>03_05_0904 + 28658251-28659288
Length = 345
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Frame = -1
Query: 482 HDQFGELVAGLEREAVDAVLHQLVQACKASIKRVKSSSGVQLVLLKMMPG-----LSGRG 318
H G +AG+E + + V C A + S+SG +LL+++ G ++ R
Sbjct: 92 HSAGGGELAGVEADILSRTASPFVVRCHAVLPASASASGDVALLLELVDGGSLASVAARA 151
Query: 317 FRTPSTYSVKAVFSKASFGFSCLDA 243
P +V V ++A G +CL A
Sbjct: 152 GAFPEA-AVAEVAAQALSGLACLHA 175
>02_05_0439 +
29014323-29014853,29014958-29015341,29015422-29015590,
29015772-29015878,29016034-29016258
Length = 471
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 387 LDGSLTSLDELVEDGVNGFTFKTGDELAKLVVNWFTGF-PDNPEQIALADRMRRELAKFR 563
+DG D + D V G F D A V+ W F D+P + + ++AK +
Sbjct: 257 VDGREALTDAQIADNVIGVIFAARDTTAS-VLTWMVKFLGDHPAVLKAVTEEQLQIAKEK 315
Query: 564 DSRWED-NW-DTRAKKI 608
++ E +W DTR K+
Sbjct: 316 EASGEPLSWADTRRMKM 332
>03_06_0365 -
33399422-33399925,33400470-33400583,33400762-33400929,
33401305-33401547,33402148-33402231,33402323-33403098,
33404423-33404636
Length = 700
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -1
Query: 509 VVGEAGEPVHDQFGELVAGLE-REAVDAVLHQLVQACKASIKRVK 378
VV G P+H Q EL G+E A L L++ + S++ VK
Sbjct: 347 VVAYGGAPIHQQLRELERGVEILVATPGRLMDLLERARVSLQMVK 391
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +2
Query: 581 QLGHARQEDL*KLKRGHALVRIRSLDSFRK*IKSPQIVYLN 703
Q+ H R+E++ +L RG L+ + S + +K +K P +YLN
Sbjct: 83 QVYHERRENMERL-RGRHLLGVSSWHASQKNVKKPIRIYLN 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,922,444
Number of Sequences: 37544
Number of extensions: 318225
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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