Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0307
         (749 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)    29   3.0  
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)             28   9.3  
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_29595| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=1.90001e-40)
          Length = 700

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = -3

Query: 396 FHQESEIFIRSPAGAAEDDAGSIGSWFQNAVHILSKGSF--LESFIRFLVFGCSKHGVV- 226
           FHQ   +  R+     + D+GSI   F++  H +   S+  L+  IRF  +   K  +  
Sbjct: 207 FHQRQPLAGRNDGAWTKSDSGSIEEGFESDRHFIDAKSWHDLQEKIRFTSYAGRKDNLEN 266

Query: 225 LSHLDVPVVLLQQRQWLEYLRW 160
            S+L   ++ +      E+ +W
Sbjct: 267 FSYLPTTIMSVINNGTPEFAQW 288


>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
          Length = 520

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 22  HMLVRMARSTERFFGQSSHFNLCVTYAMKEDL 117
           H+L  + +S ER FG SSH  +  + A +E +
Sbjct: 428 HLLESVQKSLERHFGGSSHIPITPSEAFQEQI 459


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 246 CSKHGVVLSHLDVPVVLLQQRQWLEYLRWPVVKDSSIDVP 127
           C    V LSHL    + L    WL+ L  PV+    ++VP
Sbjct: 150 CGAGSVWLSHLKKDKLKLPATYWLKDLEVPVLPSPPVEVP 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,901,593
Number of Sequences: 59808
Number of extensions: 346318
Number of successful extensions: 1642
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1641
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)