Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0307
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    85   7e-17
Z70750-2|CAA94737.1|  756|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U53339-1|AAA96197.3|  199|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81470-6|CAB03884.1|  104|Caenorhabditis elegans Hypothetical pr...    29   4.7  

>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 48/125 (38%), Positives = 69/125 (55%)
 Frame = +1

Query: 28  LVRMARSTERFFGQSSHFNLCVTYAMKEDLLQNWNINAAVLYDRPPKIFKPLTLLEKHDW 207
           +VR     E   G+ S +NLCVT AM+ DL+  W I A+  YDRPP      T+ E HD 
Sbjct: 171 IVRCVGFLEGLCGKLSDYNLCVTNAMRRDLMDRWGIRASTFYDRPP---TDTTIQEIHDL 227

Query: 208 YVKMAQNYPMFGASKHEKPNEAFEKTAFTEYVDGVLKPRPDRPGIIFSSTSWTPDEDFTL 387
           Y++++Q   +    K E       K++     +GV++    RP +  SSTSWTPDE F +
Sbjct: 228 YLRLSQKERIL-QGKDEDSTILTHKSS-----NGVVQLLTTRPIVFLSSTSWTPDERFEI 281

Query: 388 LMEAL 402
           L++AL
Sbjct: 282 LLDAL 286



 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 18/64 (28%), Positives = 35/64 (54%)
 Frame = +3

Query: 408 LDELVEDGVNGFTFKTGDELAKLVVNWFTGFPDNPEQIALADRMRRELAKFRDSRWEDNW 587
           +DELVE+  NG+ F   ++L++ ++    GFP+N  ++    R+++   + +   WE  W
Sbjct: 380 IDELVEEKTNGYLFDDSEQLSRQIIELSRGFPNNCNELI---RLKKNTQEQKFDSWEVMW 436

Query: 588 DTRA 599
              A
Sbjct: 437 KRSA 440


>Z70750-2|CAA94737.1|  756|Caenorhabditis elegans Hypothetical
           protein C50F4.2 protein.
          Length = 756

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 28/96 (29%), Positives = 41/96 (42%)
 Frame = -1

Query: 413 VQACKASIKRVKSSSGVQLVLLKMMPGLSGRGFRTPSTYSVKAVFSKASFGFSCLDAPNM 234
           + A   S  R+ + SG+Q++ +K   G  G   +     +   V   A FG S L     
Sbjct: 418 MNAATYSFTRMANHSGIQVIGIKH--GWDGLKNKDVKLLTWANVQGWAQFGGSMLGTKRQ 475

Query: 233 G*F*AILTYQSCFSNNVSGLNILGGLS*RTAALMFQ 126
                 L  +   SNNV GL I+GG     +AL+ Q
Sbjct: 476 LPSEMDLIAEGLNSNNVDGLVIIGGFMAFESALILQ 511


>U53339-1|AAA96197.3|  199|Caenorhabditis elegans Hypothetical
           protein F58A6.2 protein.
          Length = 199

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 273 SFIRFLVFGCSKHGVVLSHLDVPVVLLQQRQWL 175
           +FI FLV GCS HG++L  L        Q QWL
Sbjct: 60  AFICFLVGGCSSHGLILYSL---YSTRLQTQWL 89


>Z81470-6|CAB03884.1|  104|Caenorhabditis elegans Hypothetical
           protein C14A6.7 protein.
          Length = 104

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
 Frame = -1

Query: 482 HDQFGELVAGLER-EAVDAVLHQ-LVQACKASIKRVKSSSGVQLVLLKMMPGL 330
           H +  EL+   E+ EA   ++H+ + Q+ KAS +  K  S  QL++L + P L
Sbjct: 41  HKKARELLKNAEKYEAEAEIIHEEIAQSWKAS-RNAKEFSNFQLIILALSPAL 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,037,208
Number of Sequences: 27780
Number of extensions: 262814
Number of successful extensions: 760
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 759
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)