Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0307
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.57 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   4.0  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   5.3  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    22   7.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 0.57
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +1

Query: 211 VKMAQNYPMFGASKHEKPNEAFEKTAFTEYVDG 309
           +K  + +P   +S  E+PN   ++ +F+   DG
Sbjct: 98  IKSQKEFPNSSSSDDERPNSIHQRASFSLNTDG 130


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 285 SFLESFIRFLVFGCSKHGVVLSHLDVPVVLLQQRQWLEYL 166
           SF  + I   +F C   GV L H D PVV    R+ L Y+
Sbjct: 662 SFSATGILITLFVC---GVFLKHNDTPVVRASGRE-LSYV 697


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 5/28 (17%), Positives = 17/28 (60%)
 Frame = -3

Query: 195 LQQRQWLEYLRWPVVKDSSIDVPILQQI 112
           +Q+ +W +   W  ++  +++ PI+ ++
Sbjct: 620 IQKHKWFDGFNWEGLRARTLEPPIMPRV 647


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 136 NAAVLYDRPPKIFKPL 183
           NAA+ YDR   I +PL
Sbjct: 138 NAAIAYDRYSTIARPL 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,566
Number of Sequences: 438
Number of extensions: 3205
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)