Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0307
         (749 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16570.1 68414.m01986 glycosyl transferase family 1 protein c...   106   2e-23
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH...    31   0.62 
At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger) fa...    29   4.4  
At2g43570.1 68415.m05413 chitinase, putative similar to chitinas...    28   5.8  
At2g05920.1 68415.m00642 subtilase family protein contains simil...    28   5.8  
At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family ...    28   7.6  
At1g45201.2 68414.m05185 lipase class 3 family protein Since thi...    28   7.6  

>At1g16570.1 68414.m01986 glycosyl transferase family 1 protein
           contains similarity to mannosyltransferase GI:1800223
           from Dictyostelium discoideum; contains Pfam glycosyl
           transferase, group 1 family protein domain PF00534
          Length = 465

 Score =  106 bits (254), Expect = 2e-23
 Identities = 50/134 (37%), Positives = 85/134 (63%), Gaps = 4/134 (2%)
 Frame = +1

Query: 10  LNRXHMLVRMARSTERFFGQSSHFNLCVTYAMKEDLLQNWNINAAVLYDRPPKIFKPLTL 189
           L R ++LV + R +E  +G+ +  +LCVT AM+ +L QNW + A VLYD+PP+ F+P  L
Sbjct: 145 LGRNNLLVSLYRWSENHYGKMATGSLCVTKAMQHELDQNWGVRAKVLYDQPPEFFRPALL 204

Query: 190 LEKHDWYVKMAQN--YP--MFGASKHEKPNEAFEKTAFTEYVDGVLKPRPDRPGIIFSST 357
            E+H+ + ++ ++  +P  ++     E  N+   +T FT   +  +  + +RP ++ SST
Sbjct: 205 EERHELFCRVRKDLCHPIGVYDFISRELENQELNETLFTTKFNADISLKQNRPALVVSST 264

Query: 358 SWTPDEDFTLLMEA 399
           SWTPDE+F +L+EA
Sbjct: 265 SWTPDENFGILLEA 278



 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 24/71 (33%), Positives = 34/71 (47%)
 Frame = +3

Query: 396 SLTSLDELVEDGVNGFTFKTGDELAKLVVNWFTGFPDNPEQIALADRMRRELAKFRDSRW 575
           S + + ELV+DG NG  F +  ELA  ++  F GFP N +  AL       +      RW
Sbjct: 386 SYSCIQELVKDGKNGLLFSSSSELADQLLILFKGFPGNCD--ALMSLKAGAMETGSSGRW 443

Query: 576 EDNWDTRAKKI 608
              W+  AK +
Sbjct: 444 ATEWEDCAKPL 454


>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
           (CHX15) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 821

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +3

Query: 387 LDGSLTSLDELVEDGVNGFTFKTGDELAKLVVNWFTGFPDNPEQIALADRMRRE----LA 554
           L+ S  S+  LV+ G+NG T    + ++  V   F G PD+ E +A A RM +     L 
Sbjct: 599 LENSPCSVGILVDRGLNGATRLNSNTVSLQVAVLFFGGPDDREALAYAWRMAQHPGITLT 658

Query: 555 KFRDSRWEDNWDTRAKK 605
             R    ED  DT + +
Sbjct: 659 VLRFIHDEDEADTASTR 675


>At3g05250.1 68416.m00573 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 278

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 467 ELVAGLEREAVDAVLHQLVQACKASIKRVK 378
           EL A ++ E VD VLH LV   ++  KR+K
Sbjct: 148 ELQALMQEEDVDIVLHHLVGVMESFCKRIK 177


>At2g43570.1 68415.m05413 chitinase, putative similar to chitinase
           class IV GI:722272 from [Brassica napus]
          Length = 277

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = +1

Query: 199 HDWYVKMAQNYPMFGASKHEKPNEAF-----EKTAFTEYVDGVLKP 321
           HD ++  A +YP FGAS  ++   AF     ++T F  Y++ +  P
Sbjct: 104 HDTFMAAANSYPSFGASISKREIAAFFAHVAQETGFMCYIEEIDGP 149


>At2g05920.1 68415.m00642 subtilase family protein contains
           similarity to cucumisin-like serine protease GI:3176874
           from [Arabidopsis thaliana]
          Length = 754

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 332 LSGRGFRTPSTYSVKAVFSKASFGFSCLDAPNMG*F*AILTYQSCFSNNVSGLNILGGL 156
           + G G  T +T +  AV + +  G++   A  M     + TY+ C+S    G +IL  +
Sbjct: 205 VDGHGTHTSTTAAGSAVRNASFLGYAAGTARGMATRARVATYKVCWSTGCFGSDILAAM 263


>At1g68750.1 68414.m07859 phosphoenolpyruvate carboxylase family
           protein / PEP carboxylase family protein similar to
           SP|P51059 Phosphoenolpyruvate carboxylase 2 (EC
           4.1.1.31) (PEPCASE) {Zea mays}; contains Pfam profile
           PF00311: phosphoenolpyruvate carboxylase
          Length = 1032

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/94 (20%), Positives = 41/94 (43%)
 Frame = -3

Query: 348 EDDAGSIGSWFQNAVHILSKGSFLESFIRFLVFGCSKHGVVLSHLDVPVVLLQQRQWLEY 169
           EDD   +GS F + +       F+E   R  +   S   + ++ ++    LL+++   E 
Sbjct: 18  EDDCKLLGSLFHDVLQREVGNPFMEKVERIRILAQSALNLRMAGIEDTANLLEKQLTSEI 77

Query: 168 LRWPVVKDSSIDVPILQQIFLHGIGDTEIEVRRL 67
            + P+ +  ++       + L GI DT   + ++
Sbjct: 78  SKMPLEEALTLARTFTHSLNLMGIADTHHRMHKV 111


>At1g45201.2 68414.m05185 lipase class 3 family protein Since this
           genomic sequence region is unfinished, the annotated
           gene may be missing a stop codon or start codon
          Length = 479

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = +1

Query: 175 KP-LTLLEKHDWYVKMAQNYPMFGASKHEKPNEAFE-KTAFTEYVDGVLKPRPDRPGIIF 348
           KP +T + K+ W + +  NY  + A +  K  +AF  KT+ T     V+  R   P   F
Sbjct: 159 KPYITSVVKNTWKMDLVGNYDFYNAFQESKLTQAFVFKTSSTNPDLIVVSFRGTEP---F 215

Query: 349 SSTSWTPDEDFT 384
            +  W  D D +
Sbjct: 216 EAADWCTDLDLS 227


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,602,899
Number of Sequences: 28952
Number of extensions: 256167
Number of successful extensions: 763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)