Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0306
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...   103   3e-23
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    28   1.6  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    28   1.6  
SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr 3|||Ma...    28   1.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.2  
SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|...    27   3.8  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   5.0  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   6.6  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   8.7  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score =  103 bits (247), Expect = 3e-23
 Identities = 60/215 (27%), Positives = 105/215 (48%), Gaps = 2/215 (0%)
 Frame = +2

Query: 74  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 250
           MAPP YA + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVFN--VSGNQDAKGVISGKLET 58

Query: 251 KFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 430
            F  K  GLT ++ W T N L + + + ++ A GL + +  TF+P T  KT  L     +
Sbjct: 59  SFNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQH 118

Query: 431 DTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFAL 610
             +  + +++      + D    + ++G+LAG    +D QK   S     +GY +   ++
Sbjct: 119 PLIHTHASVNALERKFLGDF--TVGHEGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSV 176

Query: 611 HTNVDNGKD-FGGSIYQKVSDKLDCGVSMKWTAGS 712
                N    F  S Y +VS  ++ G ++ W A S
Sbjct: 177 ALQASNNLSVFRASYYHRVSSDVEAGGNVTWDAAS 211


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 168 PRASLVLNSP-AGS--PPTRKAERFLAAFPPNLQ 260
           P   L +  P AGS  P T+KA     +FPPNLQ
Sbjct: 378 PNTKLSITIPEAGSTDPETQKARAAFESFPPNLQ 411


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +2

Query: 530 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 670
           H Q     A F+K++  LGY+    AL++  DN   +  +   K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210


>SPCC338.17c |rad21||kleisin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 628

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 2/112 (1%)
 Frame = +2

Query: 161 LKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 340
           L  ++    +  SG +  +    V   +     + + G       ++DN     I +   
Sbjct: 173 LSIEAGRNAQVESGFSLGESFAHVGNDMQFHLPISNSGAATPRSVHSDNQSQISIEVGRD 232

Query: 341 IAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV--NTNLDLDLAGPVVDV 490
             A     L G   PQ         T F+  ++     T+LD +L  PV D+
Sbjct: 233 APAAAATDLSGIIGPQMTKSPASSVTHFSTPSMLPIGGTSLDDELLAPVDDL 284


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 359  VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 463
            V++E    P+  T +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPAC17G8.08c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 287

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +2

Query: 170 KSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLAT 319
           +S SG    S + S   +  V  +L S   +K + LTF  +W   + +AT
Sbjct: 176 RSRSGHTLMSQLKSKGRN--VMATLFSPLFIKAFALTFVSEWGDRSQIAT 223


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
 Frame = +2

Query: 11  APICVEFSVK*YQFVNL*NTDMAPPY------YADLGKKANDVFSKGYHFGVFKLDLKTK 172
           APIC EF+   Y F  L  T     +      YA  G   N   S  YH G    D+  +
Sbjct: 288 APICFEFAK--YGFCEL-GTSCKNQHILQCTDYAMFGSCNNPQCSL-YH-GAVSADVPEQ 342

Query: 173 SESGVEFTSGITSNQESGKVFGSLS 247
           +E+ +  T+G  + ++SG   GS S
Sbjct: 343 TEAPISKTAGSINPEDSGSEIGSNS 367


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 665 SDKLDCGVSMKWTAGSADTLFGVGSEV 745
           SD + CG    W  G+ D  +G+G ++
Sbjct: 408 SDGVTCGYMWYWNNGTWDDHYGLGEQI 434


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -3

Query: 217 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG 110
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,623
Number of Sequences: 5004
Number of extensions: 61437
Number of successful extensions: 149
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)