Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0306
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0) 233 1e-61
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07) 31 1.00
SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06) 31 1.3
SB_59295| Best HMM Match : SET (HMM E-Value=0) 30 2.3
SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39) 29 4.0
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.3
SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5) 28 7.0
SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.3
>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
Length = 379
Score = 233 bits (569), Expect = 1e-61
Identities = 102/219 (46%), Positives = 149/219 (68%)
Frame = +2
Query: 80 PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFA 259
P Y DLGK+A DVF KGY FG K+DLKT +++GVEF + +S ++GKVFGSL +K+
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLETKYK 159
Query: 260 VKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTV 439
DYG++ +EKW TDN L+++IT++D+IA GLK+ + TFAP TG K+ K+KT++ D +
Sbjct: 160 YSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQDYL 219
Query: 440 AVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTN 619
++D D AGP V +AV+ Y+GW AG +DT K+K NNF+LGY++ DF +H+
Sbjct: 220 HATGDVDFDFAGPTVQGSAVVGYEGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSA 279
Query: 620 VDNGKDFGGSIYQKVSDKLDCGVSMKWTAGSADTLFGVG 736
V++ F GSIY ++S L+ + W GS++T F G
Sbjct: 280 VNDASKFTGSIYHQISKNLEVAAQLNWATGSSNTSFQGG 318
>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
Length = 1146
Score = 31.1 bits (67), Expect = 1.00
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +2
Query: 419 SFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQ--FDTQKAKFSKNNFALGYQ 592
++TN A++T +AGPVV V+A LN + +Q F T KA+ NF
Sbjct: 213 NYTNPICALHTVTKTSVAGPVVTVSAPLNDPVAKTVLVSQEFFITAKAEI---NFEWRAS 269
Query: 593 SGDFALHTNVDNGKDF 640
D A T ++ DF
Sbjct: 270 CADSAAQTAIEGNADF 285
>SB_11395| Best HMM Match : 7tm_1 (HMM E-Value=6.3e-06)
Length = 672
Score = 30.7 bits (66), Expect = 1.3
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
Frame = -1
Query: 474 PAKSRSKLVFTATVSLVNEVFNFPVLVPVCG-AKVPSRVTLRPAAILSWIVMSVANVLSV 298
P K VF AT+ L + V N V+ CG A+ P L ++ +V +++ LSV
Sbjct: 26 PVKGILLGVFAATI-LGSLVGNIAVIRATCGMARTPVTYILVMNMAVAELVYTLSMSLSV 84
Query: 297 FHFSVKVKP*SFTANLEERLPKTFPLSWLEVIP 199
+ ++ P F L + + +P+ + VIP
Sbjct: 85 IYLELEYWPYGFRCKLSDIGYRPYPILFPIVIP 117
>SB_59295| Best HMM Match : SET (HMM E-Value=0)
Length = 1230
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +2
Query: 296 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 445
+TD N L +D + +DK K E T + TGKL+T + DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859
>SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)
Length = 632
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -3
Query: 250 GGKAAKNLSAFLVGGDPAGEFN 185
GG A L +LVGGDP +FN
Sbjct: 389 GGGAGGELRYYLVGGDPQSQFN 410
>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1717
Score = 28.7 bits (61), Expect = 5.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 599 DFALHTNVDNGKDFGGSIYQKV 664
++ +H ++ G+D+GGS YQ+V
Sbjct: 394 EYGIHLSLTVGRDYGGSYYQQV 415
>SB_49724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 466
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = +2
Query: 197 SGITSNQESGKVFGSLSSKFAVKDYGLTFTEKWNTDNTLATDITIQDK 340
SG+ +ESG+ SL+ A L T+ NTD T TD T Q+K
Sbjct: 65 SGLECKKESGEESDSLALSAATDGVLLVATDTQNTDGTW-TDGTDQEK 111
>SB_1362| Best HMM Match : PVL_ORF50 (HMM E-Value=4.5)
Length = 291
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 446 NTNLDLDLAGPVVDVAAVLNYQG--WLAGVHTQFDTQKAKFSKNNF 577
N L +DL V V VL + WL +T F+T+K K +KN+F
Sbjct: 95 NLQLYIDLGLKVTKVYRVLEFDQSPWLKQ-YTNFNTEKRKNAKNSF 139
>SB_46590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 972
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 342 ILSWIVMSVANVLSVFHFSVKVKP*SFTANLEERLPKTFPLSWLEVIPLVNSTPDSLL 169
+ ++ S ANVL V+ SV +KP LEE L W + ++TP++++
Sbjct: 871 LCNYTYSSAANVLEVYELSVGIKPSEVEILLEELKSSGALLEWPQD---ASTTPETVI 925
>SB_10616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 856
Score = 27.9 bits (59), Expect = 9.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 377 FAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNYQG 514
+AP K +L T F +DT AVN N ++ + +NY G
Sbjct: 172 YAPCNKPKLKRLLTRFVSDTGAVNQNFQTAMSEKFPVSSVKMNYLG 217
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +2
Query: 302 DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 451
++TLA +ITI + +A G + E TFAP+T TK + + T T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,631,865
Number of Sequences: 59808
Number of extensions: 473531
Number of successful extensions: 1338
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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