Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0304
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 372 e-103
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 364 e-101
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 316 1e-86
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 151 4e-68
10_01_0316 + 3479574-3482679,3482766-3483127 29 3.0
10_01_0318 + 3493913-3496976,3497064-3497392 29 5.2
10_03_0002 - 6858257-6861205 28 9.1
05_05_0377 - 24498664-24500215,24500306-24500643 28 9.1
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 372 bits (915), Expect = e-103
Identities = 167/246 (67%), Positives = 201/246 (81%)
Frame = +2
Query: 11 MDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIK 190
MDGDEMTR+ W IK++LIFP++++D YFDLGLP+RD TDD+VT+++A A LK+NV IK
Sbjct: 15 MDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAEATLKYNVAIK 74
Query: 191 CATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGR 370
CATITPDE RV+EF LK MW SPNGTIRNIL GTVFREPI+C++IPR+VPGWTKPI IGR
Sbjct: 75 CATITPDEARVKEFSLKSMWKSPNGTIRNILNGTVFREPIICKNIPRLVPGWTKPICIGR 134
Query: 371 HAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAH 550
HA GDQY+A D V+ PGK++LVY +D E V GVA MYNTDESIRSFA
Sbjct: 135 HAFGDQYRATDAVIKGPGKLKLVYEGKDEEIELEVFNFTGAGGVAQSMYNTDESIRSFAE 194
Query: 551 SSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDDM 730
+S A +KKWPLYLSTKNTILK+YDGRFKDIF+EV+++ +K+KF+ A IWYEHRLIDDM
Sbjct: 195 ASMATAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAQWKSKFEAAGIWYEHRLIDDM 254
Query: 731 VAQAIK 748
VA A+K
Sbjct: 255 VAYALK 260
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 364 bits (896), Expect = e-101
Identities = 162/246 (65%), Positives = 202/246 (82%)
Frame = +2
Query: 11 MDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIK 190
MDGDEMTRI W IK++LIFP++ +D Y+DLG+ HRDATDD+VT+++A A LK+NV IK
Sbjct: 15 MDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAAEATLKYNVAIK 74
Query: 191 CATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGR 370
CATITPDE RV+EF LK+MW SPNGTIRNI+ GTVFREPI+C+++PR+VPGWTKPI IGR
Sbjct: 75 CATITPDEARVKEFNLKQMWKSPNGTIRNIINGTVFREPIICKNVPRLVPGWTKPICIGR 134
Query: 371 HAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAH 550
HA GDQY+A D V+ PGK++LV+ +D + V GVA+ MYNTDESIR+FA
Sbjct: 135 HAFGDQYRATDAVLKGPGKLKLVFEGKDEQIDLEVFNFTGAGGVALSMYNTDESIRAFAE 194
Query: 551 SSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDDM 730
+S A +KKWPLYLSTKNTILK+YDGRFKDIF+EV+++ +K+KF+ A IWYEHRLIDDM
Sbjct: 195 ASMTTAYEKKWPLYLSTKNTILKKYDGRFKDIFQEVYEAGWKSKFEAAGIWYEHRLIDDM 254
Query: 731 VAQAIK 748
VA A+K
Sbjct: 255 VAYALK 260
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 316 bits (776), Expect = 1e-86
Identities = 160/280 (57%), Positives = 197/280 (70%), Gaps = 36/280 (12%)
Frame = +2
Query: 17 GDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCA 196
GDEMTR++W IK++LIFP++ +D Y+DLGLP+RDAT D+VTI+SA A LK+NV IKCA
Sbjct: 42 GDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNVAIKCA 101
Query: 197 TITP------------------DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQS 322
TITP DE RV+EF L MW SPNGTIRNIL GTVFREPI+C++
Sbjct: 102 TITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNILNGTVFREPIICKN 161
Query: 323 IPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGV 502
IPR+VPGW KPI IGRHA GDQY+A D V+ PGK++LV+ R+ E V GV
Sbjct: 162 IPRLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDGREEQIELDVFNFTGAGGV 221
Query: 503 AMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTK 682
A+ MYNTDESI +FA +S +A QK+WPLYLSTKNTILK+YDGRFKDIF+E +++ ++ K
Sbjct: 222 ALSMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKKYDGRFKDIFQENYETKWRAK 281
Query: 683 FDEAKIW------------------YEHRLIDDMVAQAIK 748
FD+A IW YEHRLIDDMVA A+K
Sbjct: 282 FDDAGIWNMEPYFPPLCPNHFCCGRYEHRLIDDMVAYALK 321
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 151 bits (365), Expect(2) = 4e-68
Identities = 66/91 (72%), Positives = 78/91 (85%)
Frame = +2
Query: 476 LYDFKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEE 655
+Y+FK PGVA+ MYN DESIR+FA SS +AL KKWPLYLSTKNTILK+YDGRFKDIF+E
Sbjct: 204 VYNFKGPGVALSMYNVDESIRAFAESSMAMALSKKWPLYLSTKNTILKKYDGRFKDIFQE 263
Query: 656 VFQSDYKTKFDEAKIWYEHRLIDDMVAQAIK 748
V++ +K KF+E IWYEHRLIDDMVA A+K
Sbjct: 264 VYEEKWKEKFEENSIWYEHRLIDDMVAYAVK 294
Score = 126 bits (303), Expect(2) = 4e-68
Identities = 62/101 (61%), Positives = 77/101 (76%), Gaps = 2/101 (1%)
Frame = +2
Query: 62 LIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLK 241
LIFPY+++D YFDLGL +RDATDD+VT++SA A L T+T DE RV+EFKLK
Sbjct: 101 LIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFKLK 159
Query: 242 KMWLSPNGTIRNILGGTVFREPILCQSIPRV--VPGWTKPI 358
MW SPNGTIRNIL GTVFREPILC+++PR+ VP +P+
Sbjct: 160 SMWRSPNGTIRNILNGTVFREPILCKNVPRILSVPDGAEPV 200
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 266 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 400
++RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 842 SMRNLDSTEELPEDLTYEDILRATDNWSEKYVIGRGRHGTVYRTE 886
>10_01_0318 + 3493913-3496976,3497064-3497392
Length = 1130
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 266 TIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQ 400
++RN+ E + + I R W++ VIGR HG Y+ +
Sbjct: 828 SVRNMDSTEELPEELTYEDILRGTDNWSEKYVIGRGRHGTVYRTE 872
>10_03_0002 - 6858257-6861205
Length = 982
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 386 QYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQV 565
++ + DFV GK+ L+ + D + E R+ F P A + T SI ++ S ++
Sbjct: 19 RFGSLDFVTNNFGKISLLDSESDQSGENRISVPFGLPNAAESYFKT-ISIEFASNHSGEI 77
Query: 566 ALQKKWP 586
A P
Sbjct: 78 ASSPTTP 84
>05_05_0377 - 24498664-24500215,24500306-24500643
Length = 629
Score = 27.9 bits (59), Expect = 9.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -1
Query: 261 FGLSHIFFNLNSSTLCSSGVIVAHLMPTLCF 169
+ S +F LN + +C + L+PT+C+
Sbjct: 343 YASSECYFGLNLNPMCKPSEVAYTLIPTMCY 373
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,785,515
Number of Sequences: 37544
Number of extensions: 474210
Number of successful extensions: 1130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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