Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0304
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0) 340 7e-94
SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37) 272 2e-73
SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13) 33 0.33
SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_52148| Best HMM Match : EGF (HMM E-Value=0) 31 1.3
SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23) 29 3.0
SB_36984| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0) 28 9.3
SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019) 28 9.3
SB_6680| Best HMM Match : Astacin (HMM E-Value=0) 28 9.3
>SB_17538| Best HMM Match : Iso_dh (HMM E-Value=0)
Length = 644
Score = 340 bits (836), Expect = 7e-94
Identities = 153/231 (66%), Positives = 189/231 (81%), Gaps = 1/231 (0%)
Frame = +2
Query: 59 RLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKL 238
+LI PY+ +D YFDLGL HRDAT+D+VT+++A AI KH+VGIKCATITPDE RVEEFKL
Sbjct: 19 QLISPYLDLDIKYFDLGLEHRDATNDKVTVEAAEAIRKHHVGIKCATITPDEARVEEFKL 78
Query: 239 KKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPK 418
KKMW SPNGTIRNILGGTVFR PI+C+++PR+VPGW KPIVIGRHA GDQY+A+DF V
Sbjct: 79 KKMWKSPNGTIRNILGGTVFRAPIICKTVPRLVPGWEKPIVIGRHAFGDQYRARDFAVNG 138
Query: 419 PGKVELVYTTRDGTTERRVLYDFK-TPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYL 595
PG E+ +T G +++F T GV MGMYNTDE+IR FAHS Q A+ K+ PLY+
Sbjct: 139 PGSFEISFTPESGGKLTTEVFEFTGTGGVMMGMYNTDEAIRDFAHSCMQYAIHKQVPLYM 198
Query: 596 STKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDDMVAQAIK 748
STKNTILK+YDGRFKDIF+++++ +Y+++F E IWYEHRLIDDMVA A+K
Sbjct: 199 STKNTILKKYDGRFKDIFQDIYEREYESQFKELGIWYEHRLIDDMVAYALK 249
>SB_26442| Best HMM Match : Iso_dh (HMM E-Value=3.6e-37)
Length = 296
Score = 272 bits (667), Expect = 2e-73
Identities = 138/219 (63%), Positives = 165/219 (75%), Gaps = 2/219 (0%)
Frame = +2
Query: 98 FDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRN 277
+DL + +RDAT+DQVTID+A AI + +VGIKCATITPDE+RVEEFKLKKMW SPNGTIRN
Sbjct: 6 YDLSIENRDATNDQVTIDAAAAIKQCHVGIKCATITPDEKRVEEFKLKKMWKSPNGTIRN 65
Query: 278 ILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQYKAQDFVVPKPGKVELVYTTRDG 457
ILGGTVFRE I+C++IPR+V WTKPI+IGRHAH DQYKA DFVVP PGKVE+VY+ DG
Sbjct: 66 ILGGTVFREAIICKNIPRLVSPWTKPIIIGRHAHADQYKATDFVVPGPGKVEIVYSPADG 125
Query: 458 TTE-RRVLYDFKT-PGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLSTKNTILKRYDG 631
+ + +FK GV MGM+NTD SIR+FAHSSFQ AL KK+PLY+
Sbjct: 126 GEPIKYTVNEFKDGGGVTMGMFNTDVSIRAFAHSSFQYALDKKYPLYM------------ 173
Query: 632 RFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDDMVAQAIK 748
+YK+KF+E+ IWYEHRLIDDMVA A+K
Sbjct: 174 -----------REYKSKFEESNIWYEHRLIDDMVAFALK 201
>SB_35142| Best HMM Match : Peptidase_M1 (HMM E-Value=2e-13)
Length = 302
Score = 32.7 bits (71), Expect = 0.33
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +2
Query: 560 QVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLID 724
Q+ L+ K L K TI + G + ++S YKT+ E ++W + +D
Sbjct: 167 QLLLEPKQGLVKGQKFTIKLEFSGELSNKMAGFYKSSYKTRNGEVRVWAQKEALD 221
>SB_31870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1378
Score = 31.5 bits (68), Expect = 0.76
Identities = 17/63 (26%), Positives = 27/63 (42%)
Frame = +2
Query: 107 GLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEEFKLKKMWLSPNGTIRNILG 286
G+ HRD D + + + + G CATITP++ + W++P R G
Sbjct: 336 GVIHRDIKSDNILLGMDGQVKLTDFGF-CATITPEQNKRSTMVGTPYWMAPEVVTRKQYG 394
Query: 287 GTV 295
V
Sbjct: 395 PRV 397
>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
Length = 1055
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +2
Query: 389 YKAQDFVVPKPGKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQ 562
YKA+D +PK L TR+G + R Y + P G +N + I S F+
Sbjct: 95 YKAEDCSIPKREAPVLYGVTREGLCDLRYYYCKRFPLTGKGFFNNRKLICSVRQILFR 152
>SB_26728| Best HMM Match : Disintegrin (HMM E-Value=1.9e-23)
Length = 1531
Score = 29.5 bits (63), Expect = 3.0
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 17 GDEMTRIMWAKIKE-RLIFPYVKVDCLYFDLGLPHRDATDDQVTIDS 154
G+E+ ++W+ + RL ++K DC+ LGL + D D Q+T S
Sbjct: 432 GNEVELLLWSGCDDQRLELWFMKQDCV-LPLGLRNGDIPDSQITASS 477
>SB_36984| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 29.1 bits (62), Expect = 4.0
Identities = 16/63 (25%), Positives = 30/63 (47%)
Frame = +2
Query: 557 FQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDDMVA 736
F++ +KKW LYLS K + + + + + +S K A + H D++A
Sbjct: 68 FELPPEKKWQLYLSKKKEQAEHSSTSYPEFYIDQLKSLNSQKHGRAHV-LAHPTCIDIIA 126
Query: 737 QAI 745
Q++
Sbjct: 127 QSL 129
>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 387 NTRRKILLYRNPERLNLFTLHEMVRQRGVYYMI 485
N R+ LL + N+ L+E ++QRGVY ++
Sbjct: 60 NILREALLLKRAHHPNIVKLYETLKQRGVYCLV 92
>SB_42530| Best HMM Match : ELFV_dehydrog_N (HMM E-Value=0)
Length = 520
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/72 (25%), Positives = 34/72 (47%)
Frame = +2
Query: 209 DEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGRHAHGDQ 388
D + +E++KL+K GTI N G + E +L ++P + + ++AH +
Sbjct: 295 DPKELEDYKLEK------GTITNYPGAKMVEENLLEAECDILIPAANEKQITKKNAHRIK 348
Query: 389 YKAQDFVVPKPG 424
K + + PG
Sbjct: 349 AKEKGTITNYPG 360
>SB_8123| Best HMM Match : Tfb2 (HMM E-Value=0.00019)
Length = 448
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = -1
Query: 351 FVQPGTTLGIL*HNIGSRNTVPP-KMLRIVPFGLSHIFFNLNSS 223
F P T L + +NIGS NT+ ++ R VP G+ H + +N++
Sbjct: 38 FCHPATCLTVFRYNIGSLNTLKQLRIWREVPSGV-HKRYEMNAT 80
>SB_6680| Best HMM Match : Astacin (HMM E-Value=0)
Length = 637
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/43 (25%), Positives = 23/43 (53%)
Frame = +2
Query: 224 EEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTK 352
E ++ K++ L P G + ++G + R P + I + + GW +
Sbjct: 76 EPWERKQVQLWPGGVVPYLIGEDLKRRPSFVKKIEQAMEGWER 118
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,331,339
Number of Sequences: 59808
Number of extensions: 559848
Number of successful extensions: 1446
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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