Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0304
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical pr...   378   e-105
Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical pr...   378   e-105
Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical pr...    32   0.38 
Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical pr...    31   0.66 
AF077542-12|AAC26293.1|  169|Caenorhabditis elegans Hypothetical...    31   0.87 
AF022978-10|AAG24180.2|  275|Caenorhabditis elegans Hypothetical...    31   1.2  
Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z68343-3|CAA92778.1|  412|Caenorhabditis elegans Hypothetical
           protein F59B8.2 protein.
          Length = 412

 Score =  378 bits (930), Expect = e-105
 Identities = 172/247 (69%), Positives = 210/247 (85%), Gaps = 1/247 (0%)
 Frame = +2

Query: 11  MDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIK 190
           M GDEMTRI+W  IKE+LI PYV ++  +FDLG+ HRDATDDQVTID+A+A LK+NV +K
Sbjct: 14  MQGDEMTRIIWDLIKEKLILPYVDLNVHFFDLGIEHRDATDDQVTIDAANATLKYNVAVK 73

Query: 191 CATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGR 370
           CATITPDE RVEEFKLKKMW SPNGTIRNILGGTVFREPI+ +++PR+V  W+KPI+IGR
Sbjct: 74  CATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIIVKNVPRLVNTWSKPIIIGR 133

Query: 371 HAHGDQYKAQDFVVPKPGKVELVYTTRDGT-TERRVLYDFKTPGVAMGMYNTDESIRSFA 547
           HAH DQYKA DFVVP  GK+E+ + + DGT T +  ++DFK PGV++ MYNTD+SIR FA
Sbjct: 134 HAHADQYKATDFVVPGAGKLEIKFVSADGTQTIQETVFDFKGPGVSLSMYNTDDSIRDFA 193

Query: 548 HSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDD 727
           H+SF+ ALQ+K+PLYLSTKNTILK+YDGRFKDIF E++  +Y+ +F  A IWYEHRLIDD
Sbjct: 194 HASFKYALQRKFPLYLSTKNTILKKYDGRFKDIFAEIY-PEYEAEFKAAGIWYEHRLIDD 252

Query: 728 MVAQAIK 748
           MVAQA+K
Sbjct: 253 MVAQAMK 259


>Z81479-7|CAB03943.1|  435|Caenorhabditis elegans Hypothetical
           protein C34F6.8 protein.
          Length = 435

 Score =  378 bits (929), Expect = e-105
 Identities = 167/247 (67%), Positives = 204/247 (82%), Gaps = 1/247 (0%)
 Frame = +2

Query: 11  MDGDEMTRIMWAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIK 190
           +DGDEMTRI+W +IK +LI PY+ +D  Y+DLGL +RD T+DQVTID+AHAIL+H+VGIK
Sbjct: 36  LDGDEMTRIIWKEIKNKLILPYLDLDIKYYDLGLEYRDETNDQVTIDAAHAILEHSVGIK 95

Query: 191 CATITPDEQRVEEFKLKKMWLSPNGTIRNILGGTVFREPILCQSIPRVVPGWTKPIVIGR 370
           CATITPDE R++EF LKKMWLSPNGTIRNILGGTVFREPILC++IPR+VPGWT+PI IGR
Sbjct: 96  CATITPDEARIKEFNLKKMWLSPNGTIRNILGGTVFREPILCKNIPRLVPGWTQPITIGR 155

Query: 371 HAHGDQYKAQDFVVPKPGKVELVYTTRDGTTERRVLYDF-KTPGVAMGMYNTDESIRSFA 547
           HA GDQYK  D V+P    ++L+    DG+ +   +YDF K+ GV + MYNTDESI+ FA
Sbjct: 156 HAFGDQYKCTDLVIPSGSTLQLLVNKPDGSKDVHNVYDFKKSGGVGLAMYNTDESIKGFA 215

Query: 548 HSSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDEAKIWYEHRLIDD 727
           HS FQ AL K+WPLYLSTKNTILK+YDGRFKDIF+++++  Y+  F   KIWYEHRLIDD
Sbjct: 216 HSCFQYALMKQWPLYLSTKNTILKKYDGRFKDIFQDIYEKKYEADFKNNKIWYEHRLIDD 275

Query: 728 MVAQAIK 748
            VAQA+K
Sbjct: 276 QVAQALK 282


>Z81050-9|CAB02858.2|  400|Caenorhabditis elegans Hypothetical
           protein C50B6.11 protein.
          Length = 400

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
 Frame = +2

Query: 521 TDESIRSFAH---SSFQVALQKKWPLYLSTKNTILKRYDGRFKDIFEEVFQSDYKTKFDE 691
           TD S+R F H       + L ++    L T NT     + +F +I+E  FQ+ + T FD 
Sbjct: 127 TDPSLR-FPHLGACKANLTLDQQTLTKLWTPNTCF--VNSKFAEIYESSFQNVFLTLFDN 183

Query: 692 AKIWYEHRL 718
             +W  +R+
Sbjct: 184 GTVWVNYRV 192


>Z81576-1|CAB04643.2|  312|Caenorhabditis elegans Hypothetical
           protein R10E8.1 protein.
          Length = 312

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +2

Query: 11  MDGDEMTRIM-WAKIKERLIFPYVKVDCLYFDLGLPHRDATDDQVTIDSAHAILKHNVGI 187
           MD D +T++  W +IK  LI  ++    L   L LP    T   +TI +   + KH +G+
Sbjct: 171 MDCDGLTKLPHWKRIKSLLIEGFIVSAPLEHFLHLPEVTITMQSITIFNLKLLKKHFLGL 230

Query: 188 K 190
           K
Sbjct: 231 K 231


>AF077542-12|AAC26293.1|  169|Caenorhabditis elegans Hypothetical
           protein Y57G7A.9 protein.
          Length = 169

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 131 DDQVTIDSAHAILKHNVGIKCATITPDEQRVE 226
           +DQ   +  H I K N GI+CA + P+ Q  E
Sbjct: 29  NDQYFQEVIHRICKRNEGIRCAMLAPNAQHAE 60


>AF022978-10|AAG24180.2|  275|Caenorhabditis elegans Hypothetical
           protein T01G6.10 protein.
          Length = 275

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/66 (27%), Positives = 32/66 (48%)
 Frame = +2

Query: 422 GKVELVYTTRDGTTERRVLYDFKTPGVAMGMYNTDESIRSFAHSSFQVALQKKWPLYLST 601
           G+ E+V +  D      VL +     V  G +NTD+S   + H +FQ+  +    +   T
Sbjct: 72  GQDEIVQSALDAFGRIDVLVNNAGANVVDGTFNTDQSTELY-HKTFQINFEAVIEMVKKT 130

Query: 602 KNTILK 619
           KN +++
Sbjct: 131 KNHLIE 136


>Z71266-7|CAA95845.1|  987|Caenorhabditis elegans Hypothetical
           protein R06C7.8 protein.
          Length = 987

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 632 RFKDIFEEVFQSDYKTKFDEAKIWYEHRLID 724
           ++KD F E    DY+ + D   ++ +H++ID
Sbjct: 228 KWKDTFGEDVDDDYRKRKDSGVVFVKHQVID 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,494,904
Number of Sequences: 27780
Number of extensions: 413594
Number of successful extensions: 996
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)