Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0302
         (600 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    23   2.6  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.6  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   3.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.0  
AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esteras...    21   6.0  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    21   6.0  
AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.      21   6.0  
AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.      21   6.0  
AF260821-1|AAG02019.1|  134|Tribolium castaneum alpha-esterase l...    21   6.0  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   7.9  

>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 162 RKLRPSQPDRPRQWSPCSKFRPPSRARAGT 73
           + L  S PD   +W P  ++  P  ARA +
Sbjct: 106 QSLDASDPDAMGKWCPRREWSSPPDARAAS 135


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 162 RKLRPSQPDRPRQWSPCSKFRPPSRARAGT 73
           + L  S PD   +W P  ++  P  ARA +
Sbjct: 262 QSLDASDPDAMGKWCPRREWSSPPDARAAS 291


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 255 IRAAGPSSLLSICQPSCLLERC 190
           ++A   + L S+C   CLL  C
Sbjct: 183 LKAQNSNLLKSVCADLCLLSEC 204


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +1

Query: 508  CLSTA*SGPALTWTRHGFRYLLXDRL 585
            CL+     P +TW   G ++   D++
Sbjct: 1328 CLAVGLPPPVITWKIKGVQFTTSDKI 1353


>AJ845189-1|CAH60166.1|  515|Tribolium castaneum putative esterase
           protein.
          Length = 515

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 203 Y*SDVIRNILRQHRESCGHPNLTDPDNG 120
           Y  D++ N+  Q  E C   N+  P NG
Sbjct: 65  YSKDLLFNLPAQGSEDCLFLNVYTPKNG 92


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 203 Y*SDVIRNILRQHRESCGHPNLTDPDNG 120
           Y  D++ N+  Q  E C   N+  P NG
Sbjct: 67  YSKDLLFNLPAQGSEDCLFLNVYTPKNG 94


>AJ845187-1|CAH60164.1|  515|Tribolium castaneum esterase protein.
          Length = 515

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 203 Y*SDVIRNILRQHRESCGHPNLTDPDNG 120
           Y  D++ N+  Q  E C   N+  P NG
Sbjct: 65  YSKDLLFNLPAQGSEDCLFLNVYTPKNG 92


>AJ844897-1|CAH59956.1|  517|Tribolium castaneum esterase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 203 Y*SDVIRNILRQHRESCGHPNLTDPDNG 120
           Y  D++ N+  Q  E C   N+  P NG
Sbjct: 67  YSKDLLFNLPAQGSEDCLFLNVYTPKNG 94


>AF260821-1|AAG02019.1|  134|Tribolium castaneum alpha-esterase like
           protein E2 protein.
          Length = 134

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 203 Y*SDVIRNILRQHRESCGHPNLTDPDNG 120
           Y  D++ N+  Q  E C   N+  P NG
Sbjct: 39  YSKDLLFNLPAQGSEDCLFLNVYTPKNG 66


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +3

Query: 78  QPVHEKVDETWSKVTIVGV 134
           +P+HE+V + W +    G+
Sbjct: 14  KPIHEEVAQVWEQTLQKGL 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,699
Number of Sequences: 336
Number of extensions: 2833
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15143945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)