Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0302
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0042 + 295608-296222,298479-298925 184 4e-47
06_01_0033 - 346273-347355 179 2e-45
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 49 2e-06
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 49 2e-06
04_04_0724 + 27578337-27578371,27578492-27578607,27578717-275788... 41 9e-04
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654... 37 0.011
08_01_0567 - 5040389-5040631,5042124-5042264 34 0.076
02_05_1331 + 35736543-35736638,35737407-35737525,35737670-357377... 31 0.93
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 30 1.6
01_06_1521 + 37956131-37957204,37958560-37958962,37959370-379594... 29 2.8
01_06_0276 - 28084746-28085003,28085103-28085357,28085531-280857... 29 2.8
10_08_0925 + 21604871-21605021,21605562-21605881,21606899-216078... 29 3.8
07_03_1721 - 29023979-29025295 29 3.8
03_02_0789 + 11207769-11208059,11208370-11208557,11208701-112097... 28 5.0
07_01_0743 + 5678086-5678098,5678436-5678560,5678666-5678800,567... 28 6.6
06_01_0599 - 4327671-4330034 28 6.6
08_01_0389 + 3437383-3437651,3438279-3438396,3438914-3439018,343... 25 7.9
10_08_0498 - 18342517-18342960,18343164-18343397,18343569-183437... 27 8.7
07_01_0088 + 684471-685154,685271-685834,685938-686222 27 8.7
07_01_0086 + 672173-673603 27 8.7
03_05_0267 - 22538631-22539452 27 8.7
03_02_0885 - 12169913-12170497,12170593-12170943 27 8.7
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 184 bits (449), Expect = 4e-47
Identities = 81/149 (54%), Positives = 117/149 (78%)
Frame = +3
Query: 111 SKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMRNAKIQSS 290
+K++++G G VGMA A ++LT+++ + IALVD + DKL+GEM+DLQH +AF+ ++ S
Sbjct: 40 TKISVIGAGNVGMAIAQTILTRDMADEIALVDAVPDKLRGEMLDLQHAAAFLPRVRLVSD 99
Query: 291 TDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPV 470
TD ++T GS + +VTAG RQ GESRL+L+QRN + ++I+P L ++SP+ +L+I SNPV
Sbjct: 100 TDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNPV 159
Query: 471 DILTYVTWKISGLPKHRVIGSGTNLDSAR 557
D+LTYV WK+SG P RVIGSGTNLDS+R
Sbjct: 160 DVLTYVAWKLSGFPASRVIGSGTNLDSSR 188
>06_01_0033 - 346273-347355
Length = 360
Score = 179 bits (435), Expect = 2e-45
Identities = 79/148 (53%), Positives = 113/148 (76%)
Frame = +3
Query: 114 KVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMRNAKIQSST 293
K++++G G VGMA A ++LTQ++ + I L+D +ADK++GEM+DLQH +AF+ I S T
Sbjct: 40 KISVIGAGNVGMAIAQTILTQDLADEIVLIDAVADKVRGEMLDLQHAAAFLPRVNIVSGT 99
Query: 294 DYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNPVD 473
+ S+T S + +VTAG RQ GE+RL+L+QRN + ++I+P + SP+++LVI SNPVD
Sbjct: 100 EVSLTRSSDLVIVTAGARQIPGETRLNLLQRNVSLFRKIVPAAAEASPESVLVIVSNPVD 159
Query: 474 ILTYVTWKISGLPKHRVIGSGTNLDSAR 557
+LTYV WK+SG P RVIGSGTNLDS+R
Sbjct: 160 VLTYVAWKLSGFPASRVIGSGTNLDSSR 187
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 49.2 bits (112), Expect = 2e-06
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Frame = +3
Query: 114 KVTIVGV-GQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQH-GSAFMRNAKIQS 287
KV I+G G +G A M + ++++L D+ G D+ H S + +
Sbjct: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAGTP--GVAADVSHINSPALVKGFVGE 85
Query: 288 STDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNP 467
GS + ++ AGV ++ G +R DL N ++K + + KY P+ ++ + SNP
Sbjct: 86 EQLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNP 145
Query: 468 VDILTYV---TWKISGLPKHRVIGSGTNLDSARVPLPAXGQA 584
V+ + +K +G + + T LD R G+A
Sbjct: 146 VNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKA 187
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 49.2 bits (112), Expect = 2e-06
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 5/162 (3%)
Frame = +3
Query: 114 KVTIVGV-GQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMRNAKIQSS 290
KV I+G G +G + M + ++++L D+ G D+ H +A +
Sbjct: 29 KVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIAGTP--GVAADVSHINAPAQVKGFMGD 86
Query: 291 TDYS-ITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKYSPDTILVIASNP 467
GS I ++ AGV ++ G +R DL N ++K + + KY P+ ++ + SNP
Sbjct: 87 DQLGEALEGSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPNALVNMISNP 146
Query: 468 VDILTYV---TWKISGLPKHRVIGSGTNLDSARVPLPAXGQA 584
V+ + +K +G + + T LD R G+A
Sbjct: 147 VNSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKA 188
>04_04_0724 +
27578337-27578371,27578492-27578607,27578717-27578875,
27578954-27579129,27580406-27580683,27580759-27580894,
27580984-27581095,27581177-27581268
Length = 367
Score = 40.7 bits (91), Expect = 9e-04
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 3/147 (2%)
Frame = +3
Query: 126 VGVGQVGMAAAFSMLTQNVTNNIALVDM--MADKLKGEMMDLQHGSAFMRNAKIQSSTDY 299
+G V M A ML + + L+D+ A+ L G M+L + + + +S +
Sbjct: 53 IGYAIVAMIARGLMLGADQPVVLHLLDLPVAANALNGVRMELIDAALPLLRGVVATSDEA 112
Query: 300 SITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQLIKY-SPDTILVIASNPVDI 476
G + +V G +R+G R DL+ +N + K L ++ +P+ +++ +NP +
Sbjct: 113 EAFKGVNVAIVIGGWPRRDGMERKDLISKNVTIYKSQASALHQHAAPNCKVLVVANPANT 172
Query: 477 LTYVTWKISGLPKHRVIGSGTNLDSAR 557
V + + + I T LD R
Sbjct: 173 NALVLKEFAPAIPAKNITCLTRLDHNR 199
>04_04_0672 +
27164628-27164792,27164903-27164965,27165298-27165408,
27165454-27165537,27166081-27166194,27166901-27167494,
27167604-27167675,27167761-27167997
Length = 479
Score = 37.1 bits (82), Expect = 0.011
Identities = 30/78 (38%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Frame = +2
Query: 50 QDGVPEEAVPARAREGGRNLEQGDHCRGRSGWDGRSFLYADAECYE*--HRSSRHDG*QI 223
+D P PAR E GR GD R RS W + E E HR+SR DG Q
Sbjct: 27 EDDAPRRHRPAREEEEGR----GDE-RSRSTWAEVVSDHKGGEAEERPDHRNSRRDGRQ- 80
Query: 224 ERRDDGPAARISIHEERQ 277
ERR+DG R+ ++ Q
Sbjct: 81 ERREDGDWERVDGRKQHQ 98
>08_01_0567 - 5040389-5040631,5042124-5042264
Length = 127
Score = 34.3 bits (75), Expect = 0.076
Identities = 18/46 (39%), Positives = 31/46 (67%), Gaps = 4/46 (8%)
Frame = +3
Query: 363 SRLDLVQRN--TDVLKQIIPQLIKYSPDTILVIASNPV--DILTYV 488
++L+L++ N +L +I+P L + SP+ LV+ S+P D+LTYV
Sbjct: 3 TKLELMRSNYLKKLLTEIVPALAENSPEAALVVVSDPPVDDVLTYV 48
>02_05_1331 +
35736543-35736638,35737407-35737525,35737670-35737715,
35738117-35738172,35738452-35738547,35738844-35738961,
35739406-35739672,35740023-35740124,35740302-35740659,
35740750-35740863,35741045-35741676,35741895-35742103,
35742597-35742819,35743419-35743538,35743888-35743914,
35744281-35745045,35745431-35748511
Length = 2142
Score = 30.7 bits (66), Expect = 0.93
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 443 CVRTVLYQLRDYLFKHIGVSLHEIETRFTFALSNTSSNHADLRASCY 303
CVR + +LRDY G S ++E F + N D+ SCY
Sbjct: 630 CVRALKNELRDYSANEWGDSKLKLEPEPIFIIDIIEENGEDIVQSCY 676
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/63 (28%), Positives = 31/63 (49%)
Frame = +3
Query: 393 DVLKQIIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTNLDSARVPLPA 572
++LK ++P+L D L + S+ VD+L + + ++V+G GT L S P
Sbjct: 444 EILKVLLPRLSDMVSDPALSVRSSAVDLLLAIR-DLRSFQFNKVVGLGTLLSSLSNDHPR 502
Query: 573 XGQ 581
Q
Sbjct: 503 VAQ 505
>01_06_1521 +
37956131-37957204,37958560-37958962,37959370-37959471,
37959569-37959792
Length = 600
Score = 29.1 bits (62), Expect = 2.8
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +2
Query: 11 HYVTSPTXTLTEPQDGVPEEAVPARAREGGRNLEQGDHCRGRSGWDGRSFLYADAECYE* 190
H VT P + +D PE++V GG E+ D G G D L A C +
Sbjct: 24 HAVTGPLRLFDDMEDAKPEKSVGGGGGGGGGGGEEED---GEEGGDQHFSLLGHALCVKR 80
Query: 191 HRSSRHDG 214
R + + G
Sbjct: 81 PRRALYGG 88
>01_06_0276 - 28084746-28085003,28085103-28085357,28085531-28085798,
28085948-28086253,28086369-28086643,28087034-28087252,
28087486-28089015,28089236-28089397,28089512-28089666,
28090195-28091064,28091363-28091832,28091917-28091981,
28092105-28092448,28092531-28092710,28092817-28092920,
28093053-28093162,28093648-28093744,28094138-28094238,
28094324-28094476,28094561-28094674,28094795-28094884,
28094960-28095307
Length = 2157
Score = 29.1 bits (62), Expect = 2.8
Identities = 21/63 (33%), Positives = 31/63 (49%)
Frame = +3
Query: 96 VDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMMDLQHGSAFMRNA 275
+ T KV I+G G G+AAA + N + V AD++ G MM +G M+
Sbjct: 1792 LQRTGKKVAIIGSGPAGLAAADQL---NKMGHFVTVFERADRIGGLMM---YGVPNMKTD 1845
Query: 276 KIQ 284
KI+
Sbjct: 1846 KIE 1848
>10_08_0925 +
21604871-21605021,21605562-21605881,21606899-21607897,
21608085-21608126,21608190-21608249,21608915-21608959
Length = 538
Score = 28.7 bits (61), Expect = 3.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -3
Query: 502 LIFHVTYVRISTGLLAITNIVSGLYFISCGIICLST 395
++F +T+V T L + I SG +F G ICL T
Sbjct: 435 VVFLMTFVIGQTFLAVLCRIKSGTFFFFAGWICLMT 470
>07_03_1721 - 29023979-29025295
Length = 438
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 480 SEYPRGYWRSPILCPDCTLSAA 415
S +P G W SP + P+C++SA+
Sbjct: 312 SPWPNGAWSSPWIQPNCSVSAS 333
>03_02_0789 +
11207769-11208059,11208370-11208557,11208701-11209785,
11210163-11210288,11210367-11210605,11210688-11210806,
11210894-11211014
Length = 722
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +3
Query: 390 TDVLKQIIPQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIG 530
TDVL ++ +++K PD LV+ S ++ + T+ SG P +V G
Sbjct: 195 TDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQTY-FSGAPLMKVPG 240
>07_01_0743 +
5678086-5678098,5678436-5678560,5678666-5678800,
5679128-5679200,5679581-5679654,5680292-5680396,
5680637-5680881,5680965-5681052,5681202-5681244,
5681319-5681475,5681648-5681776,5682012-5682084,
5682281-5682445,5682530-5682544,5682651-5682780,
5684517-5684651,5684880-5684945,5685088-5685170,
5685503-5685549,5685736-5685814,5685914-5686006
Length = 690
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +3
Query: 66 KKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQ 176
K LF P E KV I+G G GM+ A +L Q
Sbjct: 7 KGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQ 43
>06_01_0599 - 4327671-4330034
Length = 787
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +3
Query: 54 MESLKKLFQPVHEKVDETWSKVTIVGVGQVGMA-AAFSMLTQNVTNNI 194
MES +K F + EK E+W+ + I G Q G+ A ++ Q V N+
Sbjct: 364 MESARKAFDTMPEKTMESWNAM-ISGYAQNGLTEMAVALFEQMVKLNV 410
>08_01_0389 +
3437383-3437651,3438279-3438396,3438914-3439018,
3439983-3440180,3440269-3440355
Length = 258
Score = 24.6 bits (51), Expect(2) = 7.9
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -3
Query: 514 LGSPLIFHVTYVRISTGLLAITNIVSGLY-FISCGIICLSTSVFLCTRSRR 365
LG PL+ + + G + +Y FI G+I TS+F C + R
Sbjct: 65 LGRPLLLLLDVSSLPDGTAERLSAAWFIYAFIGVGVILFITSIFGCAGASR 115
Score = 21.4 bits (43), Expect(2) = 7.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = -3
Query: 250 CCRSIISPFNLSAI 209
CC S +S FN+ I
Sbjct: 118 CCLSFVSKFNMHVI 131
>10_08_0498 - 18342517-18342960,18343164-18343397,18343569-18343781,
18344095-18344238,18344348-18344470,18345094-18345169,
18345252-18345355,18345745-18345819,18345942-18346106,
18346248-18346346,18346478-18346677,18346767-18346846,
18346922-18347049,18347936-18348048,18348580-18348672,
18349264-18349348,18350116-18350233,18350326-18350399,
18350485-18350537,18350624-18350804,18351219-18351264,
18351355-18351432,18351556-18351626,18351735-18351798,
18352064-18352071
Length = 1022
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +3
Query: 243 LQHGSAFMRNAKIQSSTDYSITAGSKIC--VVTAGVRQREGESR 368
L HG++++ + ++ S +DY I IC ++TA V + E + +
Sbjct: 910 LAHGASYLLHDRLHSCSDYHIADVCSICGSLLTATVIKSESQKK 953
>07_01_0088 + 684471-685154,685271-685834,685938-686222
Length = 510
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 108 WSKVTIVGVGQVGMAAA 158
W KV +VG G G+AAA
Sbjct: 14 WKKVCVVGAGMAGLAAA 30
>07_01_0086 + 672173-673603
Length = 476
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 93 KVDETWSKVTIVGVGQVGMAAA 158
K+ W KV +VG G G+AAA
Sbjct: 9 KLPAQWKKVCVVGGGMAGLAAA 30
>03_05_0267 - 22538631-22539452
Length = 273
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -1
Query: 153 RPSQPDRPRQWSPCSKFRPPS 91
R S P RPR W PCS PP+
Sbjct: 171 RASPPARPRWW-PCSPSSPPA 190
>03_02_0885 - 12169913-12170497,12170593-12170943
Length = 311
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +2
Query: 44 EPQDGVPEEAVPARAREGGRNLEQGD 121
E ++G EEA+P+RA GR+ +G+
Sbjct: 55 ESEEGEREEALPSRAGSDGRSTARGE 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,666
Number of Sequences: 37544
Number of extensions: 337083
Number of successful extensions: 1034
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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