Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0302
(600 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7) 32 0.31
SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0) 31 0.71
SB_3090| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12) 29 3.8
SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20) 28 5.0
SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24) 28 5.0
SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_34490| Best HMM Match : CUB (HMM E-Value=1.3e-07) 27 8.8
SB_9360| Best HMM Match : CUB (HMM E-Value=2.5e-35) 27 8.8
SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
SB_40099| Best HMM Match : GRP (HMM E-Value=1.5) 27 8.8
SB_11413| Best HMM Match : Adaptin_N (HMM E-Value=0.00025) 27 8.8
SB_10109| Best HMM Match : PA (HMM E-Value=0.0067) 27 8.8
>SB_33220| Best HMM Match : TP2 (HMM E-Value=1.7)
Length = 590
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -1
Query: 153 RPSQPDRPRQWSPCSKFRPPSRARAGTA 70
+P QPD+ + WSPC + P + A T+
Sbjct: 279 QPRQPDQGQSWSPCMVCKTPGKVAAATS 306
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 153 RPSQPDRPRQWSPCSKFRPPSRARAGTA 70
+P QPD+ + WS C + P + A T+
Sbjct: 171 QPRQPDQGQSWSTCMVCKTPGKVAAATS 198
>SB_29957| Best HMM Match : Pro_racemase (HMM E-Value=0)
Length = 576
Score = 31.1 bits (67), Expect = 0.71
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 231 EMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLD---LVQRNTDVL 401
E+ DL+ G + IQ T T G + ++T+G + +GE+ L V+ N D L
Sbjct: 294 ELSDLEDGGVYSLEEGIQIRTVEMHTGGEPLRIITSGYPEIKGETILQKRRFVRDNLDYL 353
Query: 402 KQII 413
++++
Sbjct: 354 RKML 357
>SB_3090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 29.5 bits (63), Expect = 2.2
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 231 EMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLD---LVQRNTDVL 401
E+ DL+ G IQ T T G + ++T+G + +GE+ L V+ N D L
Sbjct: 3 ELSDLEDGGVHSLEEGIQIRTVEMHTGGEPLRIITSGYPEIKGETILQKRRFVRDNLDYL 62
Query: 402 KQII 413
++++
Sbjct: 63 RKML 66
>SB_44193| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-12)
Length = 863
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = +1
Query: 427 STVRTQYW*SPVTPWIF*RMLRGRLAGCLSTA*SGPALTWTRHG 558
S YW T W F L+G L T+ + L W RHG
Sbjct: 376 SNTLVPYWVPQGTLWSFTGYLKGHSGPLLGTSRNTLVLYWVRHG 419
>SB_58080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 687
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 191 HRSSRHDG*QIERRDDGPAARISIHEERQDPI*YGLF 301
H SS HD +ER+ P + ++E++D + LF
Sbjct: 468 HSSSGHDSPSLERKSHPPDHELPAYKEKEDQVIPSLF 504
>SB_50311| Best HMM Match : Ldl_recept_a (HMM E-Value=3.4e-20)
Length = 772
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 459 SNPVDILTYVTWKISGLPKHRVIGSGTNLDSARVPLPAXGQA 584
++PV IL T+ I G +IG G ++D RV L G+A
Sbjct: 372 NDPVGILKSQTFVILGSTISFLIGGGCDIDVVRVELVVEGKA 413
>SB_35875| Best HMM Match : RVT_1 (HMM E-Value=5.2e-24)
Length = 1423
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 459 SNPVDILTYVTWKISGLPKHRVIGSGTNLDSARVPLPAXGQA 584
++PV IL T+ I G +IG G ++D RV L G+A
Sbjct: 69 NDPVGILKSQTFVILGSTISFLIGGGCDIDVVRVELVVEGKA 110
>SB_1939| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1646
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/56 (23%), Positives = 30/56 (53%)
Frame = +3
Query: 414 PQLIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTNLDSARVPLPAXGQ 581
P ++ D L ++++P + V W+ G + + SG++++S+ +PA G+
Sbjct: 1170 PVSSRWGVDASLKLSADPPEFKPGVPWRPRGEGEEKSGSSGSSMESSPQGMPASGK 1225
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 240 PSSLLSICQPSCLLERC 190
PSS L CQPSC +E C
Sbjct: 1906 PSSCLLACQPSCPMECC 1922
>SB_34490| Best HMM Match : CUB (HMM E-Value=1.3e-07)
Length = 242
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 11 HYVTSPTXTLTE-PQDGVPEEAVPARAREGGRNLEQGDHCRGRSGWDGRSFLYAD 172
+Y+TSPT TL+ P +P ++P + QG +C G + + G +F Y D
Sbjct: 99 YYITSPTTTLSPVPPTSLPMSSLP------NVQMVQG-NCNGVTQYPGDTFGYLD 146
>SB_9360| Best HMM Match : CUB (HMM E-Value=2.5e-35)
Length = 275
Score = 27.5 bits (58), Expect = 8.8
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +2
Query: 11 HYVTSPTXTLTE-PQDGVPEEAVPARAREGGRNLEQGDHCRGRSGWDGRSFLYAD 172
+Y+TSPT TL+ P +P ++P + QG +C G + + G +F Y D
Sbjct: 132 YYITSPTTTLSPVPPTSLPMSSLP------NVQMVQG-NCNGVTQYPGDTFGYLD 179
>SB_42867| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = -3
Query: 370 RRDSPSRCRTPAVTTQIFEPAVIE*SVLDWILAFLMNADPC-CRSIISPFNLSAIMSTRA 194
R+ +P CR A ++ V+ V ++ PC CR + S +++ +MS
Sbjct: 390 RQCAPCLCRYVASVYHVY---VVMSPVCTMFMSLCRQCAPCLCRHVASVYHVYVVMSPVC 446
Query: 193 MLFVTFC 173
+F++ C
Sbjct: 447 TMFMSSC 453
>SB_40099| Best HMM Match : GRP (HMM E-Value=1.5)
Length = 80
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 53 DGVPEEAVPARAREGGRNLEQGDHCRGRSGWDGR 154
+G E A A A G R + G +C G G DGR
Sbjct: 43 EGAAEMAAEAAAENGSR--DSGGNCGGNCGRDGR 74
>SB_11413| Best HMM Match : Adaptin_N (HMM E-Value=0.00025)
Length = 435
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = +3
Query: 261 FMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQI---IPQLIKY 431
F+R K+Q T +I++ S + V + + +DL + + + QI +P +Y
Sbjct: 148 FLRRKKLQILT--TISSESNVEEVVTELSASVHDVDIDLAKESIHAIGQIALVVPSAAEY 205
Query: 432 SPDTILVIASNPVDILTYVT 491
S DT+L S ++ ++ T
Sbjct: 206 SIDTLLSFLSYEIEYISAKT 225
>SB_10109| Best HMM Match : PA (HMM E-Value=0.0067)
Length = 354
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +3
Query: 90 EKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMAD 218
E + ETW + V +V S T+N TN L+D D
Sbjct: 140 ENISETWKNLGFGSVKKVKYNVLLSFPTKNKTNGAMLLDGNGD 182
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,333,544
Number of Sequences: 59808
Number of extensions: 386165
Number of successful extensions: 1181
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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