Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0302
(600 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical pr... 245 2e-65
U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate dehydro... 245 2e-65
L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate dehyd... 245 2e-65
AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine re... 29 1.9
AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical ... 29 2.5
Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical p... 28 4.4
Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical pr... 28 4.4
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 28 5.9
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 28 5.9
AF026215-1|AAB71319.1| 352|Caenorhabditis elegans Serpentine re... 28 5.9
AC006829-1|AAF60923.1| 258|Caenorhabditis elegans Hypothetical ... 28 5.9
Z70270-6|CAA94226.2| 323|Caenorhabditis elegans Hypothetical pr... 27 7.7
U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical pr... 27 7.7
U12964-1|AAL02497.1| 465|Caenorhabditis elegans Hypothetical pr... 27 7.7
>Z49127-1|CAA88944.1| 333|Caenorhabditis elegans Hypothetical
protein F13D12.2 protein.
Length = 333
Score = 245 bits (599), Expect = 2e-65
Identities = 110/166 (66%), Positives = 139/166 (83%)
Frame = +3
Query: 60 SLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMM 239
++K++F + V+ + KVT+VGVGQVGMA A+S+L QN+ N + LVD++ADKLKGEMM
Sbjct: 4 TIKEVFAEIAAPVENSHGKVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMM 63
Query: 240 DLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQ 419
DLQHG AF R+ +++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN ++ K IIPQ
Sbjct: 64 DLQHGLAFTRHCTVKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQ 123
Query: 420 LIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTNLDSAR 557
L+KYSPDT +++ SNPVD+LTYVTWK+SGLP+ RV GSGTNLDSAR
Sbjct: 124 LVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERVFGSGTNLDSAR 169
>U15420-1|AAA67063.1| 333|Caenorhabditis elegans lactate
dehydrogenase protein.
Length = 333
Score = 245 bits (599), Expect = 2e-65
Identities = 110/166 (66%), Positives = 139/166 (83%)
Frame = +3
Query: 60 SLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMM 239
++K++F + V+ + KVT+VGVGQVGMA A+S+L QN+ N + LVD++ADKLKGEMM
Sbjct: 4 TIKEVFAEIAAPVENSHGKVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMM 63
Query: 240 DLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQ 419
DLQHG AF R+ +++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN ++ K IIPQ
Sbjct: 64 DLQHGLAFTRHCTVKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQ 123
Query: 420 LIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTNLDSAR 557
L+KYSPDT +++ SNPVD+LTYVTWK+SGLP+ RV GSGTNLDSAR
Sbjct: 124 LVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERVFGSGTNLDSAR 169
>L43563-1|AAC41613.1| 333|Caenorhabditis elegans L-lactate
dehydrogenase protein.
Length = 333
Score = 245 bits (599), Expect = 2e-65
Identities = 110/166 (66%), Positives = 139/166 (83%)
Frame = +3
Query: 60 SLKKLFQPVHEKVDETWSKVTIVGVGQVGMAAAFSMLTQNVTNNIALVDMMADKLKGEMM 239
++K++F + V+ + KVT+VGVGQVGMA A+S+L QN+ N + LVD++ADKLKGEMM
Sbjct: 4 TIKEVFAEIAAPVENSHGKVTVVGVGQVGMACAYSILQQNLANELCLVDVVADKLKGEMM 63
Query: 240 DLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGVRQREGESRLDLVQRNTDVLKQIIPQ 419
DLQHG AF R+ +++ TDYSITAGSK+CVVTAG RQREGE+RL LVQRN ++ K IIPQ
Sbjct: 64 DLQHGLAFTRHCTVKADTDYSITAGSKLCVVTAGARQREGETRLSLVQRNVEIFKGIIPQ 123
Query: 420 LIKYSPDTILVIASNPVDILTYVTWKISGLPKHRVIGSGTNLDSAR 557
L+KYSPDT +++ SNPVD+LTYVTWK+SGLP+ RV GSGTNLDSAR
Sbjct: 124 LVKYSPDTCILVVSNPVDVLTYVTWKLSGLPRERVFGSGTNLDSAR 169
>AF067950-4|AAG24157.1| 351|Caenorhabditis elegans Serpentine
receptor, class h protein87 protein.
Length = 351
Score = 29.5 bits (63), Expect = 1.9
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Frame = -3
Query: 532 DPITRCLGSPLIFHVTYVRISTGLLAI----TNIVSGLYFISCGIICLSTSVFLCTRS 371
D CLG+P IF T S GLL I + L F S + LST++ + R+
Sbjct: 76 DVFLNCLGTPYIFLPTLTGFSVGLLNFLGVPPKIQAWLAFQSLNFMLLSTTILVENRN 133
>AC024848-4|AAK68543.2| 1020|Caenorhabditis elegans Hypothetical
protein Y67D8A.1 protein.
Length = 1020
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -2
Query: 245 QVHHLSFQFVSHHVY*SDVIRNILRQHRESCGHPNLTDPDNGHLAPS 105
+++ LS Q HH++ S+ I IL RE H DP N HL S
Sbjct: 190 ELYALSHQEFGHHLW-SNAIYIILMLKREGLIHSGDIDPINRHLPAS 235
>Z92834-12|CAB07392.5| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +3
Query: 408 IIPQLIKYSPDTILVIASNPVD 473
I+ L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133
>Z81569-2|CAB04602.4| 424|Caenorhabditis elegans Hypothetical
protein K11B4.1 protein.
Length = 424
Score = 28.3 bits (60), Expect = 4.4
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +3
Query: 408 IIPQLIKYSPDTILVIASNPVD 473
I+ L+KY P+TI+ +A++P++
Sbjct: 112 IVRLLLKYQPETIITLANDPIN 133
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 188 IRNILRQHRESCGHPNLTDP 129
+ NI+ Q R+ C HPNL +P
Sbjct: 830 VLNIVMQLRKCCNHPNLFEP 849
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.9 bits (59), Expect = 5.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 188 IRNILRQHRESCGHPNLTDP 129
+ NI+ Q R+ C HPNL +P
Sbjct: 830 VLNIVMQLRKCCNHPNLFEP 849
>AF026215-1|AAB71319.1| 352|Caenorhabditis elegans Serpentine
receptor, class h protein83 protein.
Length = 352
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = -3
Query: 493 HVTYVRISTGLLAITNIVSGLYFISCGIICLSTSV 389
+VT++ + TG+ +T I ++F++C + L SV
Sbjct: 200 YVTFLALFTGIGVLTEIAQIVFFLACCVYYLFVSV 234
>AC006829-1|AAF60923.1| 258|Caenorhabditis elegans Hypothetical
protein Y9C12A.1 protein.
Length = 258
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 484 YVRISTGLLAITNIVSGLYFISCGIICL 401
YVR+ G+ + N ++ LYF+ G ICL
Sbjct: 86 YVRLPRGMF-VWNTLNSLYFLLIGTICL 112
>Z70270-6|CAA94226.2| 323|Caenorhabditis elegans Hypothetical
protein C53D6.4 protein.
Length = 323
Score = 27.5 bits (58), Expect = 7.7
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -3
Query: 445 IVSGLYFISCGIICLSTSVF 386
+V+GLY +C ++CL+T ++
Sbjct: 241 LVNGLYIFACLLVCLATFIY 260
>U41558-2|AAK39245.2| 457|Caenorhabditis elegans Hypothetical
protein K02B2.1 protein.
Length = 457
Score = 27.5 bits (58), Expect = 7.7
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +3
Query: 48 HKMESLKKLFQPVHEKVDETWSKVTIVGVGQ 140
+++E+ KK ++P+ E DE+ S + ++ G+
Sbjct: 189 NRIENYKKQYEPLDESEDESLSFIKVINAGR 219
>U12964-1|AAL02497.1| 465|Caenorhabditis elegans Hypothetical
protein F26F4.5 protein.
Length = 465
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 225 KGEMMDLQHGSAFMRNAKIQSSTDYSITAGSKICVVTAGV-RQREGESRLDLVQRN 389
K + DLQ AF++ K + + ++ T I ++ V R+ E E +L+ + ++
Sbjct: 267 KARIQDLQQEIAFLKREKSEQNEEFRQTRKDFILILKEAVLRKDEAERQLETISKS 322
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,959
Number of Sequences: 27780
Number of extensions: 271253
Number of successful extensions: 873
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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