Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0302
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   7.0  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   9.2  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 198 ERCYS*HSASA*RKLRPSQPDRPRQWSPCSK 106
           ER +  HS    R +R    +RP + + CSK
Sbjct: 154 ERAFE-HSGKLHRHMRIHTGERPHKCTVCSK 183


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/54 (22%), Positives = 24/54 (44%)
 Frame = -3

Query: 445 IVSGLYFISCGIICLSTSVFLCTRSRRDSPSRCRTPAVTTQIFEPAVIE*SVLD 284
           I  GL+  +C   C++  V+     R  + +  R   + T++  P  +   +LD
Sbjct: 297 IQKGLFLFACTNSCMNPIVYGAFNIRDRNKTSARPTTIETRV-TPLSLSLKLLD 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,535
Number of Sequences: 438
Number of extensions: 3284
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)