Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0301
         (448 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.099
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    35   0.70 
UniRef50_Q18LF7 Cluster: Helicase/primase complex; n=1; Elephant...    34   1.6  
UniRef50_UPI0000D5762A Cluster: PREDICTED: similar to CG6040-PA;...    33   3.7  
UniRef50_Q237P5 Cluster: Putative uncharacterized protein; n=2; ...    33   3.7  
UniRef50_Q7EYD8 Cluster: Putative uncharacterized protein P0665F...    32   4.9  
UniRef50_Q7S239 Cluster: Putative uncharacterized protein NCU098...    32   6.5  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.9 bits (84), Expect = 0.099
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = -2

Query: 414 VDELTAHLMLSGYWSP 367
           VDELTAHL+LSGYWSP
Sbjct: 160 VDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 35.1 bits (77), Expect = 0.70
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 234 WYLPVRTHKRSYHQ 193
           WYLP RTHKRSYH+
Sbjct: 572 WYLPARTHKRSYHR 585


>UniRef50_Q18LF7 Cluster: Helicase/primase complex; n=1; Elephantid
           herpesvirus 1|Rep: Helicase/primase complex - Elephantid
           herpesvirus 1
          Length = 975

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -1

Query: 397 PPDVKWLLEPIDIYNVNAPHTLRYIVLRSQYSHNGCPTLQTETHY--CFTAEIGGAVV 230
           P    W +     Y  +   T+ Y +L  QYS     T+QT  HY  CFT ++G  +V
Sbjct: 179 PTSPAWFISVFGSYEASLVLTMHYYLLERQYS-----TVQTTQHYAKCFTGDMGKPLV 231


>UniRef50_UPI0000D5762A Cluster: PREDICTED: similar to CG6040-PA;
           n=1; Tribolium castaneum|Rep: PREDICTED: similar to
           CG6040-PA - Tribolium castaneum
          Length = 1048

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 343 PHTLRYIVLRSQYSHNGCPTLQTETHYCFTAEIGGAVVPTR 221
           P ++  ++ + QYS  G PT +TET Y    E+  A+VP +
Sbjct: 539 PKSVDVLIKQKQYS-GGVPTKKTETVYANIGEVRSAIVPNK 578


>UniRef50_Q237P5 Cluster: Putative uncharacterized protein; n=2;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2771

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 21/59 (35%), Positives = 28/59 (47%)
 Frame = -1

Query: 385 KWLLEPIDIYNVNAPHTLRYIVLRSQYSHNGCPTLQTETHYCFTAEIGGAVVPTRADSQ 209
           K  L  IDI N N P  +  I   +QY+   C T +T  +   T   G  V+PTR+  Q
Sbjct: 618 KGFLTLIDIRNKNFPQIVNSISYENQYAFALC-TPKTSEYIFITTSTGIIVLPTRSQIQ 675


>UniRef50_Q7EYD8 Cluster: Putative uncharacterized protein
           P0665F09.120-1; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0665F09.120-1 - Oryza sativa subsp. japonica (Rice)
          Length = 496

 Score = 32.3 bits (70), Expect = 4.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +3

Query: 27  GAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 137
           G  ++ RCTGV I   G N   +I T      DFHGE
Sbjct: 199 GGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 235


>UniRef50_Q7S239 Cluster: Putative uncharacterized protein
           NCU09875.1; n=2; Sordariales|Rep: Putative
           uncharacterized protein NCU09875.1 - Neurospora crassa
          Length = 520

 Score = 31.9 bits (69), Expect = 6.5
 Identities = 22/56 (39%), Positives = 29/56 (51%)
 Frame = +3

Query: 75  GTNFSNEIRTQQMFTIDFHGEGITSCNKNETRKIIICVITGGRTSCESARVGTTAP 242
           G + +  I T     +DFH E +TSC +N  RKIII  +T G    E   +G  AP
Sbjct: 91  GRDVTVVIPTVDPLGVDFH-ECLTSCARNGPRKIII--VTAGEDLYEKT-LGAVAP 142


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,789,094
Number of Sequences: 1657284
Number of extensions: 9075349
Number of successful extensions: 19318
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19301
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23183027945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)