Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0301
         (448 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   3.0  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   4.0  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    21   5.3  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    20   9.3  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    20   9.3  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    20   9.3  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    20   9.3  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +2

Query: 29  CIRVEAMHRCSNPAGGY 79
           C  + A H+C+ P G Y
Sbjct: 353 CTTIHAGHKCTCPEGFY 369


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 4.0
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -3

Query: 194 SNYANYNFAGFIFITRCYSFTVEVNREHLLSTYFIRKIGTRLR 66
           S+Y N + A F F+ R     + +   HL     I K  ++ R
Sbjct: 413 SDYQNKSLAAFDFVARNSDTPIILWTSHLTQADVIEKYLSKAR 455


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +1

Query: 205 PLVSPHG*VPPP 240
           P V PH  VPPP
Sbjct: 12  PTVLPHQEVPPP 23


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 103 VRISLEKLVPACGIR 59
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 103 VRISLEKLVPACGIR 59
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 103 VRISLEKLVPACGIR 59
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -1

Query: 103 VRISLEKLVPACGIR 59
           + +S+  L+ ACG+R
Sbjct: 416 IPVSISLLIAACGLR 430


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,335
Number of Sequences: 336
Number of extensions: 2464
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10090848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)