Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0301
         (448 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    26   2.3  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   2.3  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   3.0  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   5.3  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.0  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    25   7.0  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    24   9.3  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    24   9.3  

>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 190 ITQIIILRVSFLLHDVIPSPWKSIVNI 110
           +T  I+L + F+LHD   S W+S+V I
Sbjct: 220 LTGTILLVIMFVLHDGSLSIWQSLVMI 246


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 406 AHSPPDVKWLLEPIDIYNVNAPHTLRYIVL 317
           A  PP +K    P+DI N++A   L+ I L
Sbjct: 224 ASQPPSIKTDASPVDIKNMDAAEKLKKIDL 253


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +3

Query: 42  KRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKNETRKIIICVITGGRTSC 212
           +RC+ + I   G+ F N I +   F+   HG+GI     +++R ++  +      SC
Sbjct: 219 RRCSKINI--TGSVFDNFIPS--FFSFGTHGDGIKQIAVDDSRSLLYVLRETSSVSC 271


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 376 LEPIDIYNVNAPHTLRYIVLRSQYSHNGCPTLQ 278
           ++P++ YN+   +    IVL +Q SH   P+L+
Sbjct: 357 IDPLNTYNIYYTNEDTSIVLDTQLSHRLLPSLR 389


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 7/17 (41%), Positives = 14/17 (82%)
 Frame = +3

Query: 156 KNETRKIIICVITGGRT 206
           K+  +K+++C+I+ GRT
Sbjct: 229 KDAWKKVVVCIISDGRT 245


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 412 GRAHSPPDVKWLLEPIDIYN 353
           G  H P  V WLL P DIY+
Sbjct: 236 GPLHDPNTVMWLLRP-DIYS 254


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 51   TGVRIPQAGTNFSNEIRTQQMF 116
            T   IP+A  +F+N+I TQ  F
Sbjct: 1302 TSSDIPKANIDFTNDISTQNTF 1323


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 33  FVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 137
           FVL  C G    + G  ++++IR+     + F+GE
Sbjct: 21  FVLFLCYGKSSRELGVKWNSDIRSWMTSYVGFNGE 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,540
Number of Sequences: 5004
Number of extensions: 37256
Number of successful extensions: 73
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)