Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0301
         (448 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    34   0.060
07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    31   0.56 
02_04_0366 - 22389591-22390527,22391296-22391429,22391762-223918...    29   2.3  
03_06_0583 + 34901636-34901721,34901805-34901902,34902029-349021...    28   3.0  
11_01_0759 + 6369149-6369231,6369765-6371556                           27   5.2  
01_06_1749 - 39636951-39638102                                         27   6.9  
01_01_0026 + 201042-201110,201252-201359,202511-202639,203164-20...    27   6.9  
05_06_0002 - 24788373-24788466,24788540-24788787                       27   9.1  

>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 33.9 bits (74), Expect = 0.060
 Identities = 17/40 (42%), Positives = 20/40 (50%)
 Frame = +3

Query: 18  KTSGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGE 137
           K  G  ++ RCTGV I   G N   +I T      DFHGE
Sbjct: 150 KKDGGGLISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 72  AGTNFSNEIRTQQMFTIDFHGEGITSC-NKNETRKIIICVITGGRTSCESARVGTTAPPI 248
           +GT+   +    ++  +D  G GIT+C  +NE +K    ++ G      + RV      +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 249 SAV 257
           +AV
Sbjct: 89  NAV 91


>02_04_0366 -
           22389591-22390527,22391296-22391429,22391762-22391816,
           22392364-22393225,22393342-22393459,22393647-22393737,
           22394627-22394670
          Length = 746

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +1

Query: 250 LP*SSNAFRFEGWG-SRCDYTETLELYISRCVAHLRCRCLWAPVT 381
           LP  ++A    G+  S+  YT+ L +Y++RC   +   C   PVT
Sbjct: 348 LPLPADAGELHGYHTSKVAYTDRLRVYVTRCALLIVQYCCCQPVT 392


>03_06_0583 +
           34901636-34901721,34901805-34901902,34902029-34902167,
           34902262-34902290,34902406-34902502,34902593-34902648,
           34902759-34902866,34902988-34903044,34905585-34905679,
           34905822-34905998,34906086-34906189,34906595-34906664,
           34906774-34906833
          Length = 391

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 75  PPAGFEHRCIASTRMHRTSXP 13
           PP G +H CI + R H TS P
Sbjct: 304 PPTGDQHACIQALRDHWTSIP 324


>11_01_0759 + 6369149-6369231,6369765-6371556
          Length = 624

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +1

Query: 274 RFEGWGSRCDY---TETLELYISRCVAHLRCRCL 366
           R  G G RC Y   T++ E +   C+AH+  RC+
Sbjct: 349 RAHGGGKRCYYPGCTKSAEEHTDFCLAHISRRCM 382


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -2

Query: 309 SIVTTAAPPFKPKRITA 259
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>01_01_0026 +
           201042-201110,201252-201359,202511-202639,203164-203440,
           203543-203647,203730-203875,204042-204149,204290-204378,
           204552-205098
          Length = 525

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -1

Query: 109 C*VRISLE--KLVPACGIRTPVHRFNTNAPDVLXVR 8
           C V+ SL+   + PACG + P H  + + P +L  R
Sbjct: 335 CLVKDSLQFGSIAPACGAKDPHHLDSLSEPQILTFR 370


>05_06_0002 - 24788373-24788466,24788540-24788787
          Length = 113

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 446 FFFFFFYCLAVWTSSQPT 393
           FFFFFF+C+ V  ++  T
Sbjct: 11  FFFFFFFCVCVLVATTTT 28


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,078,876
Number of Sequences: 37544
Number of extensions: 264465
Number of successful extensions: 549
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)