Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0301
         (448 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.3  
SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +3

Query: 12   TXKTSGAFVLKRCTGVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKNETRKIIICVI 191
            T +T+ A + K  T   I   GT  +  I T     +       T+ + +        +I
Sbjct: 1002 TDETTSASMTKHATAAPITTNGTT-AEPISTDGTTVLSMSTARTTTASMSTAGTTAAPII 1060

Query: 192  TGGRTSCESARVGTTAPPIS 251
            T G T+      GTT  P+S
Sbjct: 1061 TNGTTAAPITTNGTTTEPMS 1080


>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1411

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = -1

Query: 403  HSPPDVKWLLEPIDIYNVNAPHTLRYIVLRSQYSHNGCPTLQTETHYCFTAE 248
            HS     +  E  D Y    P T RY ++R   +        T+T  C T +
Sbjct: 983  HSTHGAAYRTEQCDTYQTGRPDTTRYGIVRHGVTRCSIVRFDTDTTRCNTVQ 1034


>SB_50821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = -1

Query: 304 SHNGCPTLQTETHYCFT---AEIGGAVVPTRADSQEVLPP 194
           SH  C   +TE+  CFT    E      PT+ +S   L P
Sbjct: 32  SHRVCTPTKTESQSCFTPTKTESQSCFTPTKTESPSCLHP 71


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,814,396
Number of Sequences: 59808
Number of extensions: 300996
Number of successful extensions: 663
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 883875528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)