Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0301
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical
           protein R06F6.6 protein.
          Length = 416

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = -1

Query: 304 SHNGCPTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITQIIILRV-SFLLHDVIPS 134
           S +  PT    T +    +I  A  PT ADS  + PP   + II ++  F  + ++P+
Sbjct: 211 SSDSTPTPTQATQFDMPTQIQTASPPTTADS-AIFPPTSPESIIQKIEQFPSNQILPN 267


>U29096-2|AAX88830.1|  133|Caenorhabditis elegans Hypothetical
           protein F30H5.5 protein.
          Length = 133

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 21  TSGAFVLKRCTG-VRIPQAGTNFSNEIRTQQMFTIDFHGEGI 143
           TS A +L+     ++  Q  T   NE  T+Q+FT+D++   I
Sbjct: 23  TSDAEILEITNAHIKAIQVATRSMNETATRQLFTLDYNNPKI 64


>AC084159-8|AAK39361.2|  655|Caenorhabditis elegans Hypothetical
           protein Y73B3A.3 protein.
          Length = 655

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 14/69 (20%), Positives = 28/69 (40%)
 Frame = -1

Query: 319 LRSQYSHNGCPTLQTETHYCFTAEIGGAVVPTRADSQEVLPPVITQIIILRVSFLLHDVI 140
           +R+    + CP       +C  A +   ++P     ++     I  + IL  S L  D +
Sbjct: 259 VRNLPKRHSCPKYDRHEEFCGAANLDSPIMPRHLSDEQRSSDAIFNVPILVASGLAPDSL 318

Query: 139 PSPWKSIVN 113
               +S++N
Sbjct: 319 RITLESLLN 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,800,116
Number of Sequences: 27780
Number of extensions: 221178
Number of successful extensions: 430
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)