Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0301
         (448 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria...    27   4.4  
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,...    27   4.4  
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria...    27   4.4  
At2g37720.1 68415.m04625 expressed protein                             27   4.4  

>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
           identical to SP|P83484 ATP synthase beta chain 2,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452187|dbj|AK118582.1|
          Length = 556

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 250 EIGGAVVPTRADSQEVLPPVITQI 179
           ++ GA+V  R + QE LPP++T +
Sbjct: 88  QVIGAIVDVRFEDQEGLPPIMTSL 111


>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
           putative strong similarity to SP|P83483 ATP synthase
           beta chain 1, mitochondrial precursor (EC 3.6.3.14)
           {Arabidopsis thaliana}, SP|P17614 ATP synthase beta
           chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
           plumbaginifolia}; contains Pfam profiles PF00006: ATP
           synthase alpha/beta family nucleotide-binding domain,
           PF00306: ATP synthase ab C terminal, PF02874: ATP
           synthase alpha/beta family beta-barrel domain
          Length = 559

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 250 EIGGAVVPTRADSQEVLPPVITQI 179
           ++ GA+V  R + QE LPP++T +
Sbjct: 91  QVIGAIVDVRFEDQEGLPPIMTSL 114


>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
           identical to SP|P83483 ATP synthase beta chain 1,
           mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
           thaliana}; strong similarity to SP|P17614 ATP synthase
           beta chain, mitochondrial precursor (EC 3.6.3.14)
           {Nicotiana plumbaginifolia}; contains Pfam profiles
           PF00006: ATP synthase alpha/beta family
           nucleotide-binding domain, PF00306: ATP synthase ab C
           terminal, PF02874: ATP synthase alpha/beta family
           beta-barrel domain; supporting cDNA
           gi|26452102|dbj|AK118538.1|
          Length = 556

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 250 EIGGAVVPTRADSQEVLPPVITQI 179
           ++ GA+V  R + QE LPP++T +
Sbjct: 88  QVIGAIVDVRFEDQEGLPPIMTSL 111


>At2g37720.1 68415.m04625 expressed protein 
          Length = 482

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +3

Query: 54  GVRIPQAGTNFSNEIRTQQMFTIDFHGEGITSCNKNETRKIIICVITGGRTSCESARVGT 233
           G  IP+   N  N +R  Q  TI F G+ +      E  + ++C+ TGG+ S E   VG+
Sbjct: 193 GCNIPEF--NRVNFLRRMQNKTIAFIGDSLG----REQFQSLMCMATGGKESPEVQNVGS 246


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,043,619
Number of Sequences: 28952
Number of extensions: 200018
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 722638680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)