Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0300
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1620 - 28288152-28288353,28288469-28288557,28288634-282888...    29   4.2  
06_03_0837 + 25261890-25261923,25262135-25262186,25262410-252626...    27   9.8  
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792...    27   9.8  
03_01_0391 - 3030532-3031344,3033177-3033434                           27   9.8  

>08_02_1620 - 28288152-28288353,28288469-28288557,28288634-28288828,
            28289082-28289423,28290227-28291672,28292590-28292666,
            28293160-28294509,28295921-28296029,28296896-28297007,
            28297800-28297957
          Length = 1359

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 145  HHDGKQRFEESVRQGRAVGYGLXVQ-IAQRSSAY 47
            HH G    E  VRQG A+  G+  Q +AQR++ Y
Sbjct: 901  HHSGNDANELKVRQGAAMKPGIYQQHLAQRNNFY 934


>06_03_0837 +
           25261890-25261923,25262135-25262186,25262410-25262645,
           25263091-25263158,25263176-25263380,25263435-25263785,
           25264566-25264633,25264736-25264797,25265615-25265708
          Length = 389

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 190 IRGSRRWXGHRYAQYHHDGKQRFEE 116
           +R +++W G  +  YH D ++RFE+
Sbjct: 309 VRETQKWGGPFHTVYHLDPQERFED 333


>06_03_0038 -
           15778446-15778577,15778685-15779020,15779106-15779225,
           15779280-15779765,15779861-15779994,15780111-15780230,
           15784881-15785018,15785404-15786079,15786179-15786340,
           15786424-15786618,15786839-15787084,15787758-15787952
          Length = 979

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +1

Query: 25  IISQCRSGRLMSAVRSARXSHSQQRAPGGPTPQIAAFRRGDTVHSGVLS 171
           ++  C + R+   + S     S+ + P GP PQ+A+  + D+ H  V S
Sbjct: 353 LVQTCHA-RVSDHIVSIIRGESRTQPPLGPQPQLASHSQPDSQHGPVAS 400


>03_01_0391 - 3030532-3031344,3033177-3033434
          Length = 356

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = -1

Query: 143 PRRKAAI*GVGPPGARCWLWLXRADRTALISL 48
           PR  A    VGPP    W  L +A R AL  L
Sbjct: 64  PREAAPAAAVGPPWKLLWSLLPKASRAALFLL 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,113
Number of Sequences: 37544
Number of extensions: 153629
Number of successful extensions: 398
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)