Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0300
         (650 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006807-5|AAK84619.1|  349|Caenorhabditis elegans Hypothetical ...    29   2.2  
AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical ...    29   2.2  
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    27   8.7  

>AC006807-5|AAK84619.1|  349|Caenorhabditis elegans Hypothetical
           protein Y58A7A.5 protein.
          Length = 349

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 187 RGSRRWXGHRYAQYHHDGKQRFEESVR 107
           RG RRW G    ++HH GK+R   +V+
Sbjct: 85  RGERRWLG----KHHHGGKERLHNAVK 107


>AC006807-4|AAK84618.1|  904|Caenorhabditis elegans Hypothetical
           protein Y58A7A.4 protein.
          Length = 904

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -2

Query: 187 RGSRRWXGHRYAQYHHDGKQRFEESVR 107
           RG RRW G    ++HH GK+R   +V+
Sbjct: 48  RGERRWLG----KHHHGGKERLHNAVK 70


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 217 ACREAYSKRIRGSRRWXGHRYAQYHHDGKQRFEESVRQGRAVGYG 83
           AC   Y+ R      + G     YH   KQ+F E  + G+ V +G
Sbjct: 499 ACPVPYTSRTPKEGEFNG---VHYHFVSKQKFHEDAKSGKFVEFG 540


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,920,001
Number of Sequences: 27780
Number of extensions: 114916
Number of successful extensions: 205
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)