Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0299
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    30   0.017
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    24   1.1  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   1.1  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.0  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    23   2.6  
AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory recept...    22   4.6  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   6.0  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 296 CKNVPLTFWRECDERSCQNCF 234
           C+N   T WRECD+ +C+  F
Sbjct: 878 CENGKPTCWRECDKATCEKLF 898


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = -2

Query: 440 IDYATQCLTHDD*DKVCPLKYYIFKSDNFINCHDQTRTIVHSFLY 306
           ID   +C  HD    +C     +F     I C  Q  TIV SF Y
Sbjct: 232 IDICMRC--HDQLCDMCGAINMLFGFPIIIGCLIQFNTIVFSFCY 274



 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -2

Query: 416 THDD*DKVCPLKYYIFKSDNFINCHDQTRTIVHSFLY 306
           +HD    VC     IF     I C  Q  TIV +F Y
Sbjct: 519 SHDKLCDVCDSVNRIFGFIIIIGCLIQFNTIVFAFCY 555


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 11/49 (22%), Positives = 23/49 (46%)
 Frame = -2

Query: 719 IVIQLRXVQNLNTIQFCYYINTIEMTINMQS*FKQVQCSLTRPVYTNFL 573
           ++  L  +  +  IQFC ++  ++    + + + +  C L    Y NFL
Sbjct: 169 VLYTLSKMSQVMLIQFCAFVVVLKQKFCVVNQYIKQVCKLNNGHYKNFL 217


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 287 VPLTFWRECDERSCQNCFIVNLMLYSYLMYI 195
           VP+  ++  D R+  N F+VNL +   ++ +
Sbjct: 89  VPIVIFKTKDMRNSTNIFLVNLSVADLMVLL 119


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 287 VPLTFWRECDERSCQNCFIVNLMLYSYLMYI 195
           VP+  ++  D R+  N F+VNL +   ++ +
Sbjct: 89  VPIVIFKTKDMRNSTNIFLVNLSVADLMVLL 119


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -2

Query: 680 IQFCYYINTIEMTINMQS*FKQVQCSLTRPVYTNFL 573
           IQFC ++  ++    + + + +  C L    Y NFL
Sbjct: 7   IQFCAFVVVLKQKFCVVNQYIKQVCKLNNGHYKNFL 42


>AM292369-1|CAL23181.1|  408|Tribolium castaneum gustatory receptor
           candidate 48 protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 689 LNTIQFCYYINTIEMTI 639
           LNT+ F Y+I+T E +I
Sbjct: 392 LNTLIFYYHISTYEYSI 408


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 377 YIFKSDNFINCHDQTRTIVHSFLY*IVCKN 288
           YIF   NF+N + Q   +++   Y ++ +N
Sbjct: 160 YIFDVPNFVNEYVQAIEVLYICSYTVLIRN 189


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,462
Number of Sequences: 336
Number of extensions: 3882
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)