Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0299
         (750 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19034| Best HMM Match : Metallothio (HMM E-Value=9)                 30   1.7  
SB_14680| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)                  28   7.0  
SB_54656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_19034| Best HMM Match : Metallothio (HMM E-Value=9)
          Length = 228

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 513 VPVAIQATYCSSLALCIPSQEKVCVYGPRE*TLYLLKS*LHINCHFNCIYIITELN 680
           VP+      C S+ +CI + +  CV+ P    +YL  S     C   C  +   LN
Sbjct: 15  VPLNANVYLCHSMRMCICATQCECVFVPLNANVYLCHSMRMCICATQCECVFVPLN 70



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 513 VPVAIQATYCSSLALCIPSQEKVCVYGPRE*TLYLLKS*LHINCHFNCIYIITELN 680
           VP+      C S+ +CI + +  CV+ P    +YL  S     C   C  +   LN
Sbjct: 41  VPLNANVYLCHSMRMCICATQCECVFVPLNANVYLCHSMRMCICATQCECVFVPLN 96



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 513 VPVAIQATYCSSLALCIPSQEKVCVYGPRE*TLYLLKS*LHINCHFNCIYIITELN 680
           VP+      C S+ +CI + +  CV+ P    +YL  S     C   C  +   LN
Sbjct: 67  VPLNANVYLCHSMRMCICATQCECVFVPLNANVYLCHSMRMCICATQCECVFVPLN 122



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 513 VPVAIQATYCSSLALCIPSQEKVCVYGPRE*TLYLLKS*LHINCHFNCIYIITELN 680
           VP+      C S+ +CI + +  CV+ P    +YL  S     C   C  +   LN
Sbjct: 93  VPLNANVYLCHSMRMCICATQCECVFVPLNANVYLCHSMRMCICATQCECVFVPLN 148



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 513 VPVAIQATYCSSLALCIPSQEKVCVYGPRE*TLYLLKS*LHINCHFNCIYIITELN 680
           VP+      C S+ +CI + +  CV+ P    +YL  S     C   C  +   LN
Sbjct: 119 VPLNANVYLCHSMRMCICATQCECVFVPLNANVYLCHSMRMCICATQCECVFVPLN 174



 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 513 VPVAIQATYCSSLALCIPSQEKVCVYGPRE*TLYLLKS*LHINCHFNCIYIITELN 680
           VP+      C S+ +CI + +  CV+ P    +YL  S     C   C  +   LN
Sbjct: 145 VPLNANVYLCHSMRMCICATQCECVFVPLNANVYLCHSMRMCICATQCECVFVPLN 200



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +3

Query: 513 VPVAIQATYCSSLALCIPSQEKVCVYGPRE*TLYLLKS*LHINCHFNCIYIITELN 680
           VP+      C S+ +CI + +  CV+ P    +YL  S     C   C  +   LN
Sbjct: 171 VPLNANVYLCHSMRMCICATQCECVFVPLNAYVYLCHSMRMCICATQCECVFVPLN 226


>SB_14680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 233

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = -3

Query: 178 LFNTLPQSL*KNILTKNFFNYFNGIDLIEVQIKTSTDADTK*NGPIITNMSRIKRNV 8
           LF TLP    +N+   N+   F   ++  +  KTS+D   + N  +I  + ++  +V
Sbjct: 136 LFRTLPSESARNLARVNWIEQFGWKNIALLYEKTSSDLAGQSNNQVIEELKKLNCSV 192


>SB_8179| Best HMM Match : zf-B_box (HMM E-Value=0.28)
          Length = 336

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +1

Query: 505 KAVCL*LYRRRIVHH*PCAYLHKRKFVYTGRVSEHCTCLNHD 630
           +++CL L R   V       LH+R   +  ++S  C C NH+
Sbjct: 66  ESLCLFLVRNFEVAKVTVCCLHERSNAHCSKMSLSCVCFNHE 107


>SB_54656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 565 GMHRAN-DEQYVACIATGTLLL 503
           G+H A  D Q+VAC+ATGT  L
Sbjct: 44  GVHLARPDHQHVACLATGTKCL 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,548,178
Number of Sequences: 59808
Number of extensions: 420548
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)