Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0299
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   4.0  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   4.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.1  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   9.3  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +3

Query: 408 VMRETLRCVVYLAPLSTF*LEKILWFRVTHMRK 506
           ++RE L+ +  L  L+T   EK+L F++T  ++
Sbjct: 384 ILRELLKKIPDLRTLNTLHSEKLLAFKMTEQQQ 416


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 210 LLNVYTRNNGGFLTLYHKVYKKI 142
           L N Y  NN  +  LY   YKK+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKL 107


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -1

Query: 210 LLNVYTRNNGGFLTLYHKVYKKI 142
           L N Y  NN  +  LY   YKK+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYKKL 107


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 239 CFIVNLMLYSYLMYIHVIMVAF 174
           C IV + L S +MYI  I++ +
Sbjct: 403 CLIVVIALVSIIMYIAFIILQY 424


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 210 LLNVYTRNNGGFLTLYHKVYKKI 142
           L N Y  NN  +  LY   Y+K+
Sbjct: 85  LSNNYNYNNNNYKKLYCNNYRKL 107


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 529 CIATGTLLLRMWVTRNHKIFSN 464
           C  T  +  R WVTR  +I +N
Sbjct: 344 CCKTRIIGRRSWVTRESQICNN 365


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 204 NVYTRNNGGFLTLYHKVYKKIS 139
           N+Y R N  ++ +    Y+KI+
Sbjct: 363 NIYERQNNEYIWIVSNKYQKIA 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,917
Number of Sequences: 438
Number of extensions: 4412
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)