Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0298
(800 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 229 5e-59
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 210 2e-53
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 201 1e-50
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 182 1e-44
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 177 3e-43
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 174 2e-42
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 174 2e-42
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 172 8e-42
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 170 4e-41
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 168 1e-40
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 160 3e-38
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 160 4e-38
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 159 1e-37
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 158 1e-37
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 156 5e-37
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 141 2e-32
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 140 3e-32
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 140 3e-32
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 140 4e-32
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 136 8e-31
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 134 2e-30
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 131 2e-29
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 128 2e-28
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 125 1e-27
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 125 1e-27
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 125 1e-27
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 125 1e-27
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 124 2e-27
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 122 1e-26
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 119 1e-25
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 118 2e-25
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 114 3e-24
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 102 9e-21
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 101 3e-20
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 97 6e-19
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 93 1e-17
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 88 2e-16
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 80 6e-14
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 79 1e-13
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 79 2e-13
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 75 2e-12
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 75 3e-12
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 75 3e-12
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 73 6e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 71 3e-11
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 70 6e-11
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 69 1e-10
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 69 1e-10
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 69 2e-10
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 68 2e-10
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 68 2e-10
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 67 4e-10
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 65 2e-09
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 64 3e-09
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 63 7e-09
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 63 9e-09
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 60 5e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 1e-07
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 59 1e-07
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 59 1e-07
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 59 1e-07
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 58 2e-07
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 58 2e-07
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 58 3e-07
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 58 3e-07
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 57 4e-07
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 56 8e-07
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 56 8e-07
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 56 8e-07
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 56 1e-06
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 55 2e-06
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 54 3e-06
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 54 4e-06
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 54 6e-06
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 54 6e-06
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 53 7e-06
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 53 7e-06
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 52 1e-05
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 50 5e-05
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 50 5e-05
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 50 7e-05
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 49 1e-04
UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441; ... 49 2e-04
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 48 2e-04
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 48 3e-04
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 48 3e-04
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 47 5e-04
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 47 5e-04
UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1; Ha... 47 5e-04
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 47 6e-04
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 46 0.001
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 45 0.002
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 45 0.002
UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2; Br... 45 0.002
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 45 0.003
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 44 0.004
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 44 0.004
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 44 0.006
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 43 0.008
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 42 0.014
UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6; Di... 40 0.055
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 40 0.055
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 37 0.51
UniRef50_A1CK37 Cluster: Glycosyl hydrolases family 16, putative... 34 4.8
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 229 bits (561), Expect = 5e-59
Identities = 132/257 (51%), Positives = 149/257 (57%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIGTLY AELG PGSLIGDDQIYNTIVTAHA
Sbjct: 9 HKDIGTLYFIFGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVM 68
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPP
Sbjct: 69 PIMIGGFGNWLVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPP 128
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
LSSNIAH G SVDLAIFSLHLAGISS SFDQ+PLFV AVGIT
Sbjct: 129 LSSNIAHGGSSVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGIT 188
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDFLDXLEVIF*FYQD 720
AF AGAIT+LLTDRNLNTSFFD + Y ++++ F +++F F QD
Sbjct: 189 AFLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFW-FFGHPKLMFSFSQD 247
Query: 721 LX*FLILFXRKRKKETL 771
L F +LF +K +K L
Sbjct: 248 LVSFHMLFPKKVEKSKL 264
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 210 bits (514), Expect = 2e-53
Identities = 116/205 (56%), Positives = 135/205 (65%)
Frame = -1
Query: 629 SKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFNRXXXXXXXXXX 450
SK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I +R
Sbjct: 14 SKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVIPADRMLITVVMKFT 73
Query: 449 XXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTILLEINNIREGGRSQN 270
I+E PAKC+EKI STD P CAI SGG TVHPVP P STI L + ++EGG +QN
Sbjct: 74 APKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIPLNKSKVKEGGSNQN 133
Query: 269 LILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIVL*I*SSPINDPGFP 90
L+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+ L I S PI PG P
Sbjct: 134 LMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMTL-IWSFPIKLPGCP 192
Query: 89 NSARIKSLKDVPIIPDQIPKIKYNV 15
NSARIKSL DVP +P PK+KYNV
Sbjct: 193 NSARIKSLSDVPTMPAHAPKMKYNV 217
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 201 bits (491), Expect = 1e-50
Identities = 109/199 (54%), Positives = 122/199 (61%)
Frame = +1
Query: 85 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 264
ELG PGSLIGDDQIYNTIVTAHA N L+PL+LGAPD+AFPR+NN
Sbjct: 13 ELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLMLGAPDMAFPRMNN 72
Query: 265 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 444
+ F IVENGAGTG TVYPPLSSNIAH G SVDLAIFSLHLAGISS
Sbjct: 73 MSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAIFSLHLAGISSIL 132
Query: 445 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 624
SFDQ+PLF+ AVGITA AGAIT+LLTDRNLNTSF
Sbjct: 133 GAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAITMLLTDRNLNTSF 192
Query: 625 FDXCWXEETQFYINIYFDF 681
FD + Y ++++ F
Sbjct: 193 FDPAGGGDPILYQHLFWFF 211
Score = 44.0 bits (99), Expect = 0.004
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILI 710
GGDPILYQHLF FFGH YILI
Sbjct: 198 GGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 182 bits (442), Expect = 1e-44
Identities = 105/227 (46%), Positives = 122/227 (53%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIGTLY AELG PG+L+GDDQIYN IVTAHA
Sbjct: 13 HKDIGTLYLIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVM 72
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPP 132
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
L+ N+AH G SVDLAIFSLHLAGISS S Q PLFV +V IT
Sbjct: 133 LAGNLAHAGASVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLIT 192
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
A A IT+LLTDRNLNT+FFD + Y ++++ F
Sbjct: 193 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFF 239
Score = 71.7 bits (168), Expect = 2e-11
Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRN-FGWLGII 788
GGDPILYQHLF FFGH YILILPGFG+ISH+++ K+ FG++G++
Sbjct: 226 GGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKKEPFGYMGMV 275
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 177 bits (430), Expect = 3e-43
Identities = 101/227 (44%), Positives = 119/227 (52%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 72 PILIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
L+ N+AH G SVDL IFSLHLAG+SS S Q PLFV AV +T
Sbjct: 132 LAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVT 191
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
A A IT+LLTDRNLNT+FFD + Y ++++ F
Sbjct: 192 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFF 238
Score = 72.9 bits (171), Expect = 8e-12
Identities = 32/50 (64%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRN-FGWLGII 788
GGDPILYQHLF FFGH YILILPGFGIISH+++ K+ FG++G++
Sbjct: 225 GGDPILYQHLFWFFGHPEVYILILPGFGIISHVVAYYAGKKEPFGYMGMV 274
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 174 bits (424), Expect = 2e-42
Identities = 99/210 (47%), Positives = 112/210 (53%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 1 HKDIGTLYLIFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 60
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPP
Sbjct: 61 PIMIGGFGNWLIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPP 120
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
L+ N+AH G SVDL IFSLHLAGISS S Q PLFV AV IT
Sbjct: 121 LAGNLAHAGASVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLIT 180
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFD 630
A A IT+LLTDRNLNT+FFD
Sbjct: 181 AVLLLLSLPVLAAGITMLLTDRNLNTTFFD 210
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 174 bits (424), Expect = 2e-42
Identities = 99/227 (43%), Positives = 119/227 (52%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIGTLY AEL PG+L+GDDQIYN IVTAHA
Sbjct: 12 HKDIGTLYLVFGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVM 71
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 72 PVMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPP 131
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
L+ N+AH G SVDL IFSLHLAG+SS + Q PLFV +V +T
Sbjct: 132 LAGNLAHAGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVT 191
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
A A IT+LLTDRNLNT+FFD + Y ++++ F
Sbjct: 192 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFF 238
Score = 71.7 bits (168), Expect = 2e-11
Identities = 31/50 (62%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRN-FGWLGII 788
GGDPILYQHLF FFGH YILILPGFG+ISH+++ K+ FG++G++
Sbjct: 225 GGDPILYQHLFWFFGHPEVYILILPGFGMISHVVTYYAGKKEPFGYMGMV 274
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 172 bits (419), Expect = 8e-42
Identities = 98/227 (43%), Positives = 119/227 (52%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIGTLY AELG PG+L+G+D IYN IVTAHA
Sbjct: 12 HKDIGTLYLLFGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVM 71
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPP
Sbjct: 72 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPP 131
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
L+ N +H G SVDL IFSLHLAG+SS + Q PLFV +V IT
Sbjct: 132 LAGNYSHPGASVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLIT 191
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
A A IT+LLTDRNLNT+FFD + Y ++++ F
Sbjct: 192 AVLLLLSLPVLAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFF 238
Score = 72.5 bits (170), Expect = 1e-11
Identities = 32/50 (64%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRN-FGWLGII 788
GGDPILYQHLF FFGH YILILPGFG+ISHI++ K+ FG++G++
Sbjct: 225 GGDPILYQHLFWFFGHPEVYILILPGFGMISHIVTYYSGKKEPFGYMGMV 274
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 170 bits (413), Expect = 4e-41
Identities = 95/227 (41%), Positives = 119/227 (52%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIG+LY EL +PGS++GDD +YN IVTAHA
Sbjct: 13 HKDIGSLYLVFGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVM 72
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPP
Sbjct: 73 PTMIGGFGNWFVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPP 132
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
L+S AH G SVD+AIFSLHLAG+SS + ++PLFV +V IT
Sbjct: 133 LASIQAHSGGSVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLIT 192
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
A AGAIT+LLTDR NT+FFD + Y ++++ F
Sbjct: 193 AILLLLSLPVLAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFF 239
Score = 35.1 bits (77), Expect = 2.1
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +3
Query: 642 GGDPILYQHLF*FFG 686
GGDPILYQHLF FFG
Sbjct: 226 GGDPILYQHLFWFFG 240
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 168 bits (409), Expect = 1e-40
Identities = 92/197 (46%), Positives = 110/197 (55%)
Frame = +1
Query: 85 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 264
ELG PGS IG+DQ+YN +VTAHA N LVPL+LGAPD+AFPR+NN
Sbjct: 23 ELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWLVPLMLGAPDMAFPRLNN 82
Query: 265 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 444
+ F VE+GAGTG TVYPPLS N AH G SVDLAIFSLHLAG+SS
Sbjct: 83 MSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPSVDLAIFSLHLAGVSSIL 142
Query: 445 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 624
+ + LFV +V ITA AGAIT+LLTDRN NTSF
Sbjct: 143 GAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVLAGAITMLLTDRNFNTSF 202
Query: 625 FDXCWXEETQFYINIYF 675
FD + Y ++++
Sbjct: 203 FDPAGGGDPILYQHLFW 219
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 160 bits (389), Expect = 3e-38
Identities = 91/229 (39%), Positives = 117/229 (51%), Gaps = 2/229 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 174
HKDIGTLY EL PG I G+ Q+YN ++TAHA
Sbjct: 13 HKDIGTLYFIFGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFM 72
Query: 175 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 354
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVY
Sbjct: 73 VMPAMIGGFGNWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVY 132
Query: 355 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 534
PPLS +H G +VDLAIFSLHL+G+SS + +LPLFV +V
Sbjct: 133 PPLSGITSHSGGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVL 192
Query: 535 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
+TAF AGAIT+LLTDRN NT+FFD + Y ++++ F
Sbjct: 193 VTAFLLLLSLPVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFF 241
Score = 77.0 bits (181), Expect = 5e-13
Identities = 35/49 (71%), Positives = 39/49 (79%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDPILYQHLF FFGH YILILPGFGIISHI+S K FG+LG++
Sbjct: 228 GGDPILYQHLFWFFGHPEVYILILPGFGIISHIVSTFSGKPVFGYLGMV 276
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 160 bits (388), Expect = 4e-38
Identities = 95/228 (41%), Positives = 115/228 (50%), Gaps = 2/228 (0%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
TA AGAIT+LLTDRN NTSF+D + Y ++++ F
Sbjct: 191 TAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFF 238
Score = 74.5 bits (175), Expect = 3e-12
Identities = 32/49 (65%), Positives = 39/49 (79%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDPILYQHLF FFGH YILI+PGFG++SHI+S K FG+LG++
Sbjct: 225 GGDPILYQHLFWFFGHPEVYILIIPGFGMVSHIVSAFSGKPVFGYLGMV 273
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 159 bits (385), Expect = 1e-37
Identities = 91/229 (39%), Positives = 118/229 (51%), Gaps = 2/229 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 174
HKDIGTLY EL P + L+G+ QIYN ++TAHA
Sbjct: 18 HKDIGTLYLIFGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFM 77
Query: 175 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 354
N LVP+++G+PD+AFPR+NNI F +VE G GTG TVY
Sbjct: 78 VMPVMIGGFGNWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVY 137
Query: 355 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 534
PPLSS +H G +VDLAIFSLH++G SS S ++PLFV ++
Sbjct: 138 PPLSSIQSHSGGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSIL 197
Query: 535 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
+TAF AGAIT+LLTDRN NTSFFD + Y ++++ F
Sbjct: 198 VTAFLLLLAVPVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFF 246
Score = 75.8 bits (178), Expect = 1e-12
Identities = 33/49 (67%), Positives = 39/49 (79%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDPILYQHLF FFGH YILILPGFG+ISHI+S K FG++G++
Sbjct: 233 GGDPILYQHLFWFFGHPEVYILILPGFGMISHIVSTFSRKPVFGYIGMV 281
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 158 bits (384), Expect = 1e-37
Identities = 94/225 (41%), Positives = 113/225 (50%), Gaps = 2/225 (0%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIY 672
TA AGAIT+LLTDRN NTSF+D + Y +++
Sbjct: 191 TAILLLLSLPVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 156 bits (379), Expect = 5e-37
Identities = 94/231 (40%), Positives = 119/231 (51%), Gaps = 1/231 (0%)
Frame = +1
Query: 85 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 264
ELG PGSLIG+DQIYN+IVT+HA N L+PL+LG+PD++FPR+NN
Sbjct: 24 ELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNWLIPLMLGSPDMSFPRMNN 83
Query: 265 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXX 444
+ F + G GTG TVYPPLS + H G SVDL IFSLHLAG SS
Sbjct: 84 MSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGMSVDLGIFSLHLAGASSIM 143
Query: 445 XXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSF 624
+ D++ LF +V ITA AGAIT+LLTDRN+NTSF
Sbjct: 144 GAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPVLAGAITMLLTDRNMNTSF 203
Query: 625 FDXCWXEETQFYINIYFDFLDXLEVIF*FYQDLX*FL-ILFXRKRKKETLG 774
FD + Y ++++ F EV ++F KKET G
Sbjct: 204 FDPSGGGDPILYQHLFW-FFGHPEVYILILPGFGIISHMIFNESGKKETFG 253
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 141 bits (341), Expect = 2e-32
Identities = 86/227 (37%), Positives = 107/227 (47%), Gaps = 1/227 (0%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 180
KDIG LY EL PG I D+Q+YN+I+TAHA
Sbjct: 13 KDIGVLYLIYALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVM 72
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N L+PL LG PD+ FPR+NNI + +ENG GTG T+YPP
Sbjct: 73 PALIGGFGNFLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPP 132
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
LS +H G SVDLAIF LHL+GISS +L LF AV IT
Sbjct: 133 LSGIQSHSGPSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVIT 192
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
A AG IT++LTDRN NTSFF+ + Y ++++ F
Sbjct: 193 AVLLLLSLPVLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFF 239
Score = 72.9 bits (171), Expect = 8e-12
Identities = 33/49 (67%), Positives = 37/49 (75%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDPILYQHLF FFGH YILI+PGFGIIS IS K FG+LG++
Sbjct: 226 GGDPILYQHLFWFFGHPEVYILIIPGFGIISTTISANSNKSVFGYLGMV 274
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 140 bits (340), Expect = 3e-32
Identities = 87/228 (38%), Positives = 109/228 (47%), Gaps = 2/228 (0%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PLSS AH G SVDLAIF+LHL ISS + +LPLFV ++ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFI 191
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
TAF + IT+LL DRN NTSFF+ + Y ++++ F
Sbjct: 192 TAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFF 239
Score = 70.9 bits (166), Expect = 3e-11
Identities = 30/49 (61%), Positives = 38/49 (77%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDPILY+HLF FFGH YILI+PGFGIISH++S +K FG + ++
Sbjct: 226 GGDPILYEHLFWFFGHPEVYILIIPGFGIISHVVSTYSKKPVFGEISMV 274
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 140 bits (340), Expect = 3e-32
Identities = 87/228 (38%), Positives = 109/228 (47%), Gaps = 2/228 (0%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDI LY EL PGS L G+ Q++N +V HA
Sbjct: 12 KDIAVLYFMLAIFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLV 71
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N L+PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYLLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PLSS AH G SVDLAIF+LHL ISS + +LPLFV ++ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFI 191
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
TAF + IT+LL DRN NTSFF+ + Y ++++ F
Sbjct: 192 TAFLLLLSLPVLSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFF 239
Score = 36.3 bits (80), Expect = 0.90
Identities = 15/24 (62%), Positives = 19/24 (79%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILIL 713
GGDPILY+HLF FFG + I++L
Sbjct: 226 GGDPILYEHLFWFFGQTVATIIML 249
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 140 bits (339), Expect = 4e-32
Identities = 86/228 (37%), Positives = 110/228 (48%), Gaps = 2/228 (0%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDI +Y EL PGS L G+ Q++N +V HA
Sbjct: 12 KDISIMYFMLALFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLA 71
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N ++PL++GA D++FPRIN+I F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PLSS AH G SVDLAIFSLHL ISS S ++PLFV A+ I
Sbjct: 132 PLSSIQAHSGPSVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFI 191
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
TAF + IT+LL DRN NTSFF+ + FY + ++ F
Sbjct: 192 TAFLLLLSLPVLSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFF 239
Score = 68.5 bits (160), Expect = 2e-10
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDPI YQH F FFGH YILI+PGFGI+SHI+S +K FG + ++
Sbjct: 226 GGDPIFYQHAFWFFGHPEVYILIIPGFGIVSHIVSTYSKKPVFGEISMV 274
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 136 bits (328), Expect = 8e-31
Identities = 80/227 (35%), Positives = 106/227 (46%), Gaps = 1/227 (0%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 180
KDI LY EL PG I D+Q+YN+I+T+H
Sbjct: 39 KDIAILYLIFALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVM 98
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N L+P+++G PD+AFPR+NN+ + I+ENG GTG T+YPP
Sbjct: 99 PALIGGFGNFLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPP 158
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
LS +H VDL IF LHL+GISS +L LF AV IT
Sbjct: 159 LSGIQSHSSMGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVIT 218
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
A A AIT+LLTDRNLNTSF++ + Y ++++ F
Sbjct: 219 AVLLLLSLPVLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFF 265
Score = 72.9 bits (171), Expect = 8e-12
Identities = 34/55 (61%), Positives = 39/55 (70%)
Frame = +3
Query: 624 F*XLLXGGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
F L GGD ILYQHLF FFGH YILI+PGFGIIS +IS K FG+LG++
Sbjct: 246 FYELAGGGDAILYQHLFWFFGHPEVYILIIPGFGIISTVISANSNKNVFGYLGMV 300
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 134 bits (324), Expect = 2e-30
Identities = 82/228 (35%), Positives = 108/228 (47%), Gaps = 2/228 (0%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDI LY EL PG L G++Q++N +V HA
Sbjct: 12 KDIAVLYFLLALFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMV 71
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N ++PL++GA D AFPRINNI F +VE+GAGTG TVYP
Sbjct: 72 MPALIGGFGNYMLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYP 131
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PL+S AH G SVDLAIF+LH+ ISS + +LPLFV A+ I
Sbjct: 132 PLASIQAHSGPSVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILI 191
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
TA + +T+LL DRN NTSFF+ + Y ++++ F
Sbjct: 192 TAVLLLLTLPVLSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFF 239
Score = 33.9 bits (74), Expect = 4.8
Identities = 13/15 (86%), Positives = 14/15 (93%)
Frame = +3
Query: 642 GGDPILYQHLF*FFG 686
GGDPILY+HLF FFG
Sbjct: 226 GGDPILYEHLFWFFG 240
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 131 bits (317), Expect = 2e-29
Identities = 81/229 (35%), Positives = 99/229 (43%), Gaps = 2/229 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 174
HK IG LY EL PG L G+ YN I T H
Sbjct: 14 HKRIGILYLFFGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVV 73
Query: 175 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 354
N VP+++GAPD++FPR+NN F E G GTG TVY
Sbjct: 74 VMPILFGGFGNYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVY 133
Query: 355 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 534
PPLSS +H G SVDL IFS HL GI S LPLFV +V
Sbjct: 134 PPLSSLQSHSGASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVA 193
Query: 535 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
+T+F A AIT+LL DRN NTSF+D + Y ++++ F
Sbjct: 194 VTSFLVIVAIPVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFF 242
Score = 69.3 bits (162), Expect = 1e-10
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGD +LYQHLF FFGH YILILPGFG++SHII+ +KR FG + +I
Sbjct: 229 GGDVVLYQHLFWFFGHPEVYILILPGFGLVSHIIATFSKKRVFGHVPMI 277
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 128 bits (308), Expect = 2e-28
Identities = 79/194 (40%), Positives = 92/194 (47%), Gaps = 2/194 (1%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYP
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYP 130
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PLS +H G SVDLAIFSLHL+GISS + +LPLFV A+ +
Sbjct: 131 PLSGLQSHSGGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFV 190
Query: 538 TAFXXXXXXXXXAG 579
TA AG
Sbjct: 191 TAILLLLSLPVLAG 204
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 125 bits (302), Expect = 1e-27
Identities = 70/196 (35%), Positives = 100/196 (51%)
Frame = +1
Query: 94 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 273
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 274 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 453
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 454 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDX 633
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 634 CWXEETQFYINIYFDF 681
+ Y +I++ F
Sbjct: 241 SGGGDPLLYEHIFWFF 256
Score = 62.1 bits (144), Expect = 2e-08
Identities = 26/49 (53%), Positives = 36/49 (73%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDP+LY+H+F FFGH YILI+P FG++S I+ +K FG +G+I
Sbjct: 243 GGDPLLYEHIFWFFGHPEVYILIVPVFGVVSQIVQVYAKKPIFGKIGMI 291
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 125 bits (302), Expect = 1e-27
Identities = 70/196 (35%), Positives = 100/196 (51%)
Frame = +1
Query: 94 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 273
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 274 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 453
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 454 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDX 633
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 634 CWXEETQFYINIYFDF 681
+ Y +I++ F
Sbjct: 241 SGGGDPLLYEHIFWFF 256
Score = 62.1 bits (144), Expect = 2e-08
Identities = 26/49 (53%), Positives = 36/49 (73%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDP+LY+H+F FFGH YILI+P FG++S I+ +K FG +G+I
Sbjct: 243 GGDPLLYEHIFWFFGHPEVYILIVPVFGVVSQIVQVYAKKPIFGKIGMI 291
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 125 bits (302), Expect = 1e-27
Identities = 70/196 (35%), Positives = 100/196 (51%)
Frame = +1
Query: 94 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 273
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 274 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 453
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 454 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDX 633
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 634 CWXEETQFYINIYFDF 681
+ Y +I++ F
Sbjct: 241 SGGGDPLLYEHIFWFF 256
Score = 37.1 bits (82), Expect = 0.51
Identities = 18/41 (43%), Positives = 27/41 (65%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKR 764
GGDP+LY+H+F FFG I+I+ II++ I K+ K+
Sbjct: 243 GGDPLLYEHIFWFFGQIWPIIIII--IIIINYAICGKDFKK 281
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 125 bits (301), Expect = 1e-27
Identities = 69/194 (35%), Positives = 99/194 (51%)
Frame = +1
Query: 94 NPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRF 273
NP L+ + Q++N ++TAHA N LVPL +G+ D AFPRINN+ F
Sbjct: 61 NPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALANYLVPLQIGSNDTAFPRINNLAF 120
Query: 274 XXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXX 453
+++ G G+G T+YPPL+S +H G S+D+AIF+LHL+G+SS
Sbjct: 121 VVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHSGSSIDMAIFALHLSGLSSIFGAI 180
Query: 454 XXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDX 633
+ +LPLFV +V ITA A +T+LL DRN NTSFF
Sbjct: 181 NLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILALPVLAAGLTMLLMDRNFNTSFFVV 240
Query: 634 CWXEETQFYINIYF 675
+ Y +I++
Sbjct: 241 SGGGDPLLYEHIFY 254
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 124 bits (300), Expect = 2e-27
Identities = 78/226 (34%), Positives = 103/226 (45%), Gaps = 2/226 (0%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYF 136
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PL+ +H G +VDLAIFSLHL+G SS ++ +PLF AV
Sbjct: 137 PLAGIQSHSGPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLF 196
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYF 675
TA A +T+ + DRN NTSFF+ + Y ++++
Sbjct: 197 TAILLLLSLPVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFY 242
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 122 bits (293), Expect = 1e-26
Identities = 71/152 (46%), Positives = 85/152 (55%)
Frame = +1
Query: 220 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 399
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 400 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 579
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 580 AITILLTDRNLNTSFFDXCWXEETQFYINIYF 675
AIT+LLTDRN+NTSFFD + Y ++++
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFW 155
Score = 35.5 bits (78), Expect = 1.6
Identities = 14/16 (87%), Positives = 14/16 (87%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGH 689
GGDPILYQHLF F GH
Sbjct: 144 GGDPILYQHLFWFXGH 159
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 119 bits (286), Expect = 1e-25
Identities = 79/231 (34%), Positives = 106/231 (45%), Gaps = 5/231 (2%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-SLIGDDQIYNTIVTAHAXXXXXXXXX 180
KDIGTLY EL PG I ++Q+YN+I+TAHA
Sbjct: 41 KDIGTLYLIFALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVM 100
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV--- 351
N L+PL++G PD+AFPR+NNI F I+E G GTG T+
Sbjct: 101 PALIGGFGNFLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKD 160
Query: 352 -YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 528
YPPLS +H G SVDLAIF+LHL+G+SS +L LF A
Sbjct: 161 KYPPLSGLQSHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALFGWA 220
Query: 529 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
+ IT++LTDRN NTSFF+ + + ++++ F
Sbjct: 221 TWSSRSRYFL-------GITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFF 264
Score = 70.5 bits (165), Expect = 5e-11
Identities = 31/49 (63%), Positives = 37/49 (75%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDPIL+QHLF FFGH YILI+PGFGIIS IS K FG++G++
Sbjct: 251 GGDPILFQHLFWFFGHPEVYILIIPGFGIISTTISSSSNKPIFGYIGMV 299
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 118 bits (283), Expect = 2e-25
Identities = 84/247 (34%), Positives = 111/247 (44%), Gaps = 20/247 (8%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPG-------SLIGD------DQIY---N 132
HKDIGTLY AEL PG + D DQ Y N
Sbjct: 36 HKDIGTLYLIFAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWN 95
Query: 133 TIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXX 312
++TAH N VP+++GAPD+AFPR+NNI F
Sbjct: 96 VLITAHGLIMVFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLGS 155
Query: 313 XIVE----NGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 480
V NGAGTG TVY PLS++ G +VD+AI SLH+AG SS
Sbjct: 156 TFVPGGTGNGAGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNM 214
Query: 481 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFY 660
+ ++PLFV +V +TAF A AIT+LLTDRN T+F+D + + Y
Sbjct: 215 RAPGMTLHKMPLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPELY 274
Query: 661 INIYFDF 681
++++ F
Sbjct: 275 QHLFWFF 281
Score = 69.7 bits (163), Expect = 8e-11
Identities = 32/48 (66%), Positives = 36/48 (75%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGI 785
GGDP LYQHLF FFGH YI+ILPGFGIIS I+S K FG+LG+
Sbjct: 268 GGDPELYQHLFWFFGHPEVYIMILPGFGIISQIVSTFSRKPVFGYLGM 315
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 114 bits (274), Expect = 3e-24
Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 2/202 (0%)
Frame = +1
Query: 82 AELGNPGSLIG--DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPR 255
A LG L G D ++N ++T H N +PL++GAPD+AFPR
Sbjct: 143 ALLGTMDQLDGNPDGHLWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPR 202
Query: 256 INNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGIS 435
+NN+ + +++ GAG G T YPP+S+ R+VD AIF++H++G S
Sbjct: 203 LNNLSYWMYVAGTCLAFCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGAS 262
Query: 436 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 615
S + ++PLF +V +TA+ AGAIT+LLTDRN
Sbjct: 263 SILGSINFITTFLNMRAPGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFG 322
Query: 616 TSFFDXCWXEETQFYINIYFDF 681
T+FFD + + +I++ F
Sbjct: 323 TTFFDPAGGGDPILFQHIFWFF 344
Score = 67.3 bits (157), Expect = 4e-10
Identities = 28/49 (57%), Positives = 38/49 (77%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDPIL+QH+F FFGH YI+ILP FG+ISHI++ +K FG+L ++
Sbjct: 331 GGDPILFQHIFWFFGHPEVYIVILPAFGVISHIVATFSKKPIFGYLPMV 379
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 102 bits (245), Expect = 9e-21
Identities = 59/194 (30%), Positives = 84/194 (43%)
Frame = +1
Query: 100 GSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 279
G L GD Q YN ++T+H N +P++ G PD+ FPR+NN+ F
Sbjct: 48 GILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNYFIPVMAGFPDMVFPRLNNMSFWM 107
Query: 280 XXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXX 459
+ E G G G T+YP L H + D +F++HL GISS
Sbjct: 108 YLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSLACDFVMFAVHLLGISSILNSINL 167
Query: 460 XXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCW 639
SF LF+ A ITA AG +T++L DRN NTSF+D
Sbjct: 168 LGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPVLAGGVTLILCDRNFNTSFYDVVG 227
Query: 640 XEETQFYINIYFDF 681
+ + +I++ F
Sbjct: 228 GGDLILFQHIFWFF 241
Score = 50.8 bits (116), Expect = 4e-05
Identities = 22/40 (55%), Positives = 30/40 (75%)
Frame = +3
Query: 624 F*XLLXGGDPILYQHLF*FFGHXGSYILILPGFGIISHII 743
F ++ GGD IL+QH+F FFGH YI++LP FG+IS I+
Sbjct: 222 FYDVVGGGDLILFQHIFWFFGHPEVYIILLPVFGLISTIV 261
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 101 bits (241), Expect = 3e-20
Identities = 65/229 (28%), Positives = 92/229 (40%), Gaps = 2/229 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXX 174
HK IGT Y EL +PG G Q+YN+++T H
Sbjct: 21 HKTIGTYYIVLGYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFL 80
Query: 175 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVY 354
N ++PL+LGAP++AFPR+N + F + G G+ T Y
Sbjct: 81 VMPILIGGFGNWMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFY 140
Query: 355 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 534
PPLS S+D I LH GI S + DQ+ +FV
Sbjct: 141 PPLSVE-GQPELSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSY 199
Query: 535 ITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
+T+F AG++ LL DRN NTSF+D Y ++++ F
Sbjct: 200 LTSFLLVLSVPVLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFF 248
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/45 (55%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISH-IISQKEEKRNFG 773
GG+P+LYQHLF FFGH Y++ILP FGIIS ++ ++ R FG
Sbjct: 235 GGNPLLYQHLFWFFGHPEVYVIILPVFGIISEAVLFLTDKDRLFG 279
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 96.7 bits (230), Expect = 6e-19
Identities = 56/122 (45%), Positives = 64/122 (52%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKD GTL AELG PG+L+GDDQ N IVTAHA
Sbjct: 13 HKDXGTLXXIFGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXM 72
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPP
Sbjct: 73 PIMIGGFGNWLVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPP 132
Query: 361 LS 366
L+
Sbjct: 133 LA 134
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 92.7 bits (220), Expect = 1e-17
Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 1/210 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIGT+Y EL +PG + +Y++I+T HA
Sbjct: 14 HKDIGTIYLYMGLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVM 73
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N +PL++ D++ PR+NN+ + G G G T+YPP
Sbjct: 74 PTSIGGLGNWFIPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPP 133
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGI 537
LS++ G +DLA+FSLH+AG+SS F L P+ + +
Sbjct: 134 LSNSEFMDGLPIDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFG 193
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
T+ A +T+LL DR+ +TSF+
Sbjct: 194 TSILLVTSVPVLAAGLTLLLLDRHFSTSFY 223
Score = 65.3 bits (152), Expect = 2e-09
Identities = 30/49 (61%), Positives = 37/49 (75%), Gaps = 1/49 (2%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRN-FGWLGI 785
GGDPIL+QHLF FFGH YILILP FG+ISHI+ + K + FG +G+
Sbjct: 228 GGDPILWQHLFWFFGHPEVYILILPAFGVISHILCRSSAKLHVFGKIGM 276
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 88.2 bits (209), Expect = 2e-16
Identities = 51/118 (43%), Positives = 61/118 (51%)
Frame = +1
Query: 85 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 264
ELG PGSL+ DDQ+YN +VTAH N LVPL+LGAPD+AFPR+NN
Sbjct: 24 ELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRMNN 83
Query: 265 IRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 438
+ F + G + PL G SVDLAIF LHLAG+SS
Sbjct: 84 MSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGPSVDLAIFPLHLAGVSS 139
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 80.2 bits (189), Expect = 6e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +1
Query: 220 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 399
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 400 LAIFS 414
LAI+S
Sbjct: 61 LAIYS 65
Score = 37.9 bits (84), Expect = 0.29
Identities = 18/36 (50%), Positives = 20/36 (55%)
Frame = +3
Query: 519 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF 626
CM C +Y TCFS S+Y IIN K KY IF
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIF 132
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 79.0 bits (186), Expect = 1e-13
Identities = 79/210 (37%), Positives = 91/210 (43%), Gaps = 1/210 (0%)
Frame = +1
Query: 1 HKDIGTL-YXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXX 177
HKD GTL + L G +IG QI VTA A
Sbjct: 1 HKDXGTLXFXFXXWSAXFXGXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFV 60
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
L PL +GAP +A PR+ N+ F + G G VYP
Sbjct: 61 MPTLXGGFGXXLXPLXVGAPXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYP 120
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
P SS +AH +VDL IF LHLAGISS ++ LF
Sbjct: 121 PXSSGLAHSSGAVDLGIFXLHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVX 180
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
A AIT+L R N SFF
Sbjct: 181 XXXXLILSXPVLAAAITMLXXXRXXNXSFF 210
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 78.6 bits (185), Expect = 2e-13
Identities = 50/126 (39%), Positives = 57/126 (45%), Gaps = 2/126 (1%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDIGTLY EL PG L GD Q+YN I+TAHA
Sbjct: 11 KDIGTLYLIFAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMV 70
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV
Sbjct: 71 MPAMVGGFGNYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKC 130
Query: 358 PLSSNI 375
LS I
Sbjct: 131 KLSQII 136
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 74.9 bits (176), Expect = 2e-12
Identities = 65/217 (29%), Positives = 87/217 (40%), Gaps = 8/217 (3%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIG LY EL +PG + + YN+++T+H
Sbjct: 94 HKDIGLLYGAFGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFAT 153
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRF--XXXXXXXXXXXXXXIVE-NGAGTG*TV 351
N L+PL++GA D+AFPRIN I F I E A TG T+
Sbjct: 154 PIIAAFS-NYLIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTM 212
Query: 352 YPPLS-----SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPL 516
Y PLS N A+ G VDL + LHL+G+S+ S+ L +
Sbjct: 213 YTPLSVGEGMGNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDI 270
Query: 517 FV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
F + + AI +LL DRN TSFF
Sbjct: 271 FSWTILTQSGLILFAFPLLGSAIMMLLFDRNFGTSFF 307
Score = 52.4 bits (120), Expect = 1e-05
Identities = 24/51 (47%), Positives = 34/51 (66%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIMLT 797
G IL+QHLF FFGH YI++LP GIIS+I+ + +R FG+ ++ T
Sbjct: 311 GGAILWQHLFWFFGHPEVYIIVLPPMGIISYILPRFSGRRLFGFKFVVYST 361
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 74.5 bits (175), Expect = 3e-12
Identities = 42/119 (35%), Positives = 55/119 (46%), Gaps = 2/119 (1%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI--GDDQIYNTIVTAHAXXXXXXX 174
HKDIGTLY EL PG+ I G+ Q+YN ++TAHA
Sbjct: 14 HKDIGTLYLIFGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFM 73
Query: 175 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 351
N VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 74 VMPAMIGGFGNWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 74.5 bits (175), Expect = 3e-12
Identities = 56/200 (28%), Positives = 75/200 (37%), Gaps = 1/200 (0%)
Frame = +3
Query: 192 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI* 371
W IW L N+ +++L + + I + KW N +N+L T
Sbjct: 53 WSIWNLVNPSDDWSTSHGLSPNENHELLISSSFLHFITSLGSSSKWSSNSLNNLSSTIKN 112
Query: 372 YRT*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXX 551
R I F + M C
Sbjct: 113 NCPCRSICSPSNFLPSSCRCLIYSSFYNFYYNYHNYANTGNVLWPAPTVRMICICNCIST 172
Query: 552 XXXTTCFSWSYYNIINRSKLKYIIF*XLLXGGDPILYQHLF*FFGHXGSYILILPGFGII 731
++ SW N S Y F GGD IL+QHLF FFGH YILILPGFG+I
Sbjct: 173 TFISSSISWGNNNASYSSNY-YTTFFDPAGGGDXILFQHLFXFFGHPEVYILILPGFGMI 231
Query: 732 SHIISQKEEKRN-FGWLGII 788
SH+I+ KR FG+LG++
Sbjct: 232 SHVIAHYSGKREPFGYLGMV 251
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 73.3 bits (172), Expect = 6e-12
Identities = 47/187 (25%), Positives = 81/187 (43%), Gaps = 1/187 (0%)
Frame = +1
Query: 124 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 303
+YN I T H N +P++ G+P++A+PRIN+I
Sbjct: 58 LYNMIFTIHGIIMIFFNIMPGLFGGFGNYFLPILCGSPELAYPRINSISLLLQPIAFVLV 117
Query: 304 XXXXIVENGAGTG*TVYPPLSSNIAHRGR-SVDLAIFSLHLAGISSXXXXXXXXXXXXXX 480
E G GTG T+YPPLS+++ +VD+ IF L ++G++S
Sbjct: 118 ILSTAAEFGGGTGWTLYPPLSTSLMSLSPVAVDVIIFGLLVSGVASIMSSLNFITTVMHL 177
Query: 481 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFY 660
+ L + ++ IT+ G + +LL+D + NT FFD + + Y
Sbjct: 178 RAKGLTLGILSVSTWSLIITSGMLLLTLPVLTGGVLMLLSDLHFNTLFFDPTFAGDPILY 237
Query: 661 INIYFDF 681
++++ F
Sbjct: 238 QHLFWFF 244
Score = 64.9 bits (151), Expect = 2e-09
Identities = 30/49 (61%), Positives = 35/49 (71%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIM 791
GDPILYQHLF FFGH YILILP FG+ISH+IS + FG +I+
Sbjct: 232 GDPILYQHLFWFFGHPEVYILILPAFGVISHVISTNYCRNLFGNQSMIL 280
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 70.9 bits (166), Expect = 3e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +1
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 538 TAFXXXXXXXXXAGAITILLTDR 606
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.1 bits (77), Expect = 2.1
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +3
Query: 192 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 317
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 70.1 bits (164), Expect = 6e-11
Identities = 52/193 (26%), Positives = 77/193 (39%)
Frame = +1
Query: 97 PGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 276
PG + D + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 277 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 456
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 457 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXC 636
+F + LFV + AGA+T+L D+ L T+FF+
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 637 WXEETQFYINIYF 675
+ Y NI++
Sbjct: 180 KGGDPLIYQNIFW 192
Score = 46.8 bits (106), Expect = 6e-04
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDP++YQ++F F+ H Y+ +LP FG S II + FG+ ++
Sbjct: 181 GGDPLIYQNIFWFYSHPVVYVQVLPVFGFYSEIIPVFARRPLFGYTSMV 229
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 69.3 bits (162), Expect = 1e-10
Identities = 31/50 (62%), Positives = 38/50 (76%), Gaps = 1/50 (2%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHI-ISQKEEKRNFGWLGII 788
GGDPIL+QHLF FFGH Y+LILPGFGI+SHI +S +FG+ G+I
Sbjct: 315 GGDPILFQHLFWFFGHPEVYVLILPGFGIVSHICMSLSNNDSSFGYYGLI 364
Score = 60.9 bits (141), Expect = 4e-08
Identities = 58/227 (25%), Positives = 83/227 (36%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG LY L +P + +YN +VT H
Sbjct: 110 HKRIGLLYFVFGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLM 169
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N +P+ L D+ PR+N++ G G G T+YPP
Sbjct: 170 PILIGGFGNYFLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPP 227
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
LS G VD +FSLHLAG+SS SF+ + V A T
Sbjct: 228 LSI-WEGSGFGVDYLMFSLHLAGVSS----LIGSVNFISTIFSRLSFN-CSIIVWAYLFT 281
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
+ A IT+LL DRN T+FF+ + + ++++ F
Sbjct: 282 SVLLLLSLPVLASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFF 328
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 68.9 bits (161), Expect = 1e-10
Identities = 45/187 (24%), Positives = 77/187 (41%)
Frame = +1
Query: 121 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 300
+IYN + T H N L P++LG D+ +PR+N
Sbjct: 60 EIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLYPVLLGYCDVVYPRVNLYSLLFQPIGFVL 119
Query: 301 XXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXX 480
+E G+GTG T+YPPLS+++++ G +D IF L AGI+S
Sbjct: 120 VVSSIYLEIGSGTGWTLYPPLSTSLSNVG--IDFIIFGLLAAGIASTLSSVNFITTFTSV 177
Query: 481 XXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFY 660
D++ ++ +T+F ++ DR+ NT FF+ + Y
Sbjct: 178 KTIGFVIDRISPAAWSIVLTSFLLLLSLPVVTAVFLMVFLDRHYNTMFFESSNSGDPVLY 237
Query: 661 INIYFDF 681
++++ F
Sbjct: 238 QHLFWFF 244
Score = 62.9 bits (146), Expect = 9e-09
Identities = 28/43 (65%), Positives = 32/43 (74%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFG 773
GDP+LYQHLF FFGH YI+ILPGFGIIS ++S K FG
Sbjct: 232 GDPVLYQHLFWFFGHPEVYIMILPGFGIISLLLSTYTTKEMFG 274
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 68.5 bits (160), Expect = 2e-10
Identities = 58/227 (25%), Positives = 87/227 (38%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
H D+ LY +L P L D +YN VT H
Sbjct: 9 HIDVSLLYFSLGIFSALLGMSFSLLFRLQLAFPSILTSD--VYNAFVTLHGLVMVFFAAM 66
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N L+P PD+ FPR+N + F ++ + A G T YPP
Sbjct: 67 PTAIGFFANLLIPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPP 121
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
LSS SV+ ++FSLHLAGI+S + L LF ++ +
Sbjct: 122 LSS----LSPSVEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLV 175
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
+ A IT++LTD++L T F+D + Y ++++ F
Sbjct: 176 SLLLVLSLPVLAVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFF 222
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIM 791
GGDP+LYQHLF FFGH Y++ILP FG+ S I R G L +++
Sbjct: 209 GGDPLLYQHLFWFFGHPEVYVVILPVFGLFSSSIQLSSLHRIPGELSLVL 258
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 68.1 bits (159), Expect = 2e-10
Identities = 45/168 (26%), Positives = 65/168 (38%), Gaps = 1/168 (0%)
Frame = +1
Query: 127 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 306
Y I T H N L+PL++GA D+AFPR+N F
Sbjct: 86 YQQIFTTHGLVMIFFAVTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVL 145
Query: 307 XXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 483
G AG G T Y PLS+N+ G L + ++ + G+SS
Sbjct: 146 ASFFAPLGSAGAGWTTYTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLR 205
Query: 484 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
++ +LPL + + +TA A +LL DR+ T FF
Sbjct: 206 APGMTYMRLPLTIWGLWLTAILNALFVPVLGSAALLLLLDRSFGTEFF 253
Score = 52.4 bits (120), Expect = 1e-05
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGDPIL+QHLF FGH YI+ILP +GI+ ++S K + + G +
Sbjct: 263 GGDPILWQHLFWIFGHPEVYIMILPAWGILGDVLSFFARKPHHWYRGTV 311
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 68.1 bits (159), Expect = 2e-10
Identities = 30/45 (66%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = +2
Query: 656 FISTFILIFWTXWKLYFNFTRIWXNFSYYFXERGKK-KLWVVRNN 787
F+STFILIFWT LYFNFT IW NFSYYF + KK LWV +N
Sbjct: 23 FMSTFILIFWTPSSLYFNFTSIWYNFSYYFPSKSKKGNLWVFSDN 67
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 67.3 bits (157), Expect = 4e-10
Identities = 52/216 (24%), Positives = 85/216 (39%), Gaps = 6/216 (2%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLI----GDDQIYNTIVTAHAXXXXX 168
HK IG LY EL G I + IYN +T H
Sbjct: 18 HKIIGILYGYMGYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLF 77
Query: 169 XXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXI-VENGAGTG* 345
N L+P+++G +++ PR+N I F + + +G
Sbjct: 78 VFIMPVGIGFYGNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGW 137
Query: 346 TVYPPLSSNIAHR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV 522
T+YPPLS+ A G ++DL++ +H+ GISS +F + ++
Sbjct: 138 TLYPPLSTRDADNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYN 197
Query: 523 *AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFD 630
++ +T+ AIT LL DRN+N++ +D
Sbjct: 198 FSIIVTSILLIGSLPILGVAITGLLLDRNINSTIYD 233
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/48 (52%), Positives = 33/48 (68%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GDP+LYQHLF FFGH Y++ILP FG+ S I++ K FG G++
Sbjct: 236 GDPVLYQHLFWFFGHPEVYVIILPVFGLTSLILTSIIHKDIFGREGMM 283
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 65.3 bits (152), Expect = 2e-09
Identities = 44/126 (34%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDI LY EL N GS L G+ Q +N ++TAHA
Sbjct: 17 KDIAVLYFIFALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFV 76
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV
Sbjct: 77 MPALVGGFGNYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKK 136
Query: 358 PLSSNI 375
SS +
Sbjct: 137 ICSSKM 142
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 64.5 bits (150), Expect = 3e-09
Identities = 53/210 (25%), Positives = 75/210 (35%), Gaps = 1/210 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIG LY +L P S Y VT H
Sbjct: 21 HKDIGLLYLVTSIAFLLIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFAS 80
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYP 357
N +VPL +GA D+AFPR+N + + E+GA G T+Y
Sbjct: 81 PFAFGLA-NYIVPLQIGARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYA 139
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PL++ I G +DLA ++ L +S + ++P+F ++
Sbjct: 140 PLTARIYTPGIGLDLAALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILF 199
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
T +LL DRNL T FF
Sbjct: 200 TVILMLWAFPPLMVGGALLLLDRNLGTEFF 229
Score = 39.5 bits (88), Expect = 0.096
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIIS 746
G +L+ HLF FFGH YIL+ P G ++ +IS
Sbjct: 234 GGALLWDHLFWFFGHPEVYILLFPALGAMADVIS 267
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 63.3 bits (147), Expect = 7e-09
Identities = 51/210 (24%), Positives = 75/210 (35%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG +Y +L P + +++N + T H
Sbjct: 32 HKRIGIMYILTAVFYLAVGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGM 91
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N VPL++GA D+AFPR+N+ F + + G Y P
Sbjct: 92 PVLTGFA-NYFVPLMIGARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVP 150
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
LSS + VD I L + GI S S ++PLFV + +
Sbjct: 151 LSSKAYSSLQGVDYWIIGLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQ 210
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFD 630
A A+ +LL DR L ++FFD
Sbjct: 211 AILIILALPALNSALAMLLIDRWLGSAFFD 240
Score = 51.6 bits (118), Expect = 2e-05
Identities = 23/45 (51%), Positives = 29/45 (64%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGW 776
GG +L+QH F FGH YILILPGFG+IS +I K +G+
Sbjct: 244 GGSAVLWQHYFWIFGHPEVYILILPGFGMISEVIPVFSRKPIYGY 288
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 62.9 bits (146), Expect = 9e-09
Identities = 51/211 (24%), Positives = 77/211 (36%), Gaps = 2/211 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIG LY EL + +YN ++T+H
Sbjct: 68 HKDIGILYGVYGTIAFAWGGVSVLLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGT 127
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVY 354
N +PL++ A D+AFPRIN I F ++ A T T+Y
Sbjct: 128 PMIAAFG-NYFIPLLIDADDMAFPRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMY 186
Query: 355 PPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 534
PLS ++ +VD+ + LHL G+S+ + L +F +
Sbjct: 187 TPLSLQMS--SPAVDMMMLGLHLTGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTML 244
Query: 535 ITAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
+ A+ +LL DRN T+FF
Sbjct: 245 TQSGLILFAFPLFGSALIMLLLDRNFGTTFF 275
Score = 56.0 bits (129), Expect = 1e-06
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIMLT 797
GGDPI +QHLF FFGH Y+L+LP GI+S I+ + ++ FG+ ++ T
Sbjct: 279 GGDPIFWQHLFWFFGHPEVYVLVLPPMGIVSLILPKFSGRKLFGFKFVVYST 330
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 60.5 bits (140), Expect = 5e-08
Identities = 48/209 (22%), Positives = 70/209 (33%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK +G +Y A+L P + D YN I T H
Sbjct: 53 HKKLGIMYIISAVIMLFRGGVDGLMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAM 112
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N +VPL +GA D+AFP +NN+ F ++ G T Y P
Sbjct: 113 PFLIGLI-NVVVPLQIGARDVAFPYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMP 171
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
L+SN G + + L +AGI + + ++P+F IT
Sbjct: 172 LASNDMSPGPGENYYLLGLQIAGIGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLIT 231
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFF 627
A+ +L DR FF
Sbjct: 232 MVIIVFAFPVLTVALALLSFDRLFGAHFF 260
Score = 50.0 bits (114), Expect = 7e-05
Identities = 25/55 (45%), Positives = 34/55 (61%)
Frame = +3
Query: 624 F*XLLXGGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
F L GG P+L+ +LF +GH YI+ILP FGI S IIS K+ FG+ ++
Sbjct: 259 FFTLEAGGMPMLWANLFWIWGHPEVYIVILPAFGIFSEIISSFARKQLFGYKAMV 313
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +1
Query: 316 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 438
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 59.3 bits (137), Expect = 1e-07
Identities = 38/118 (32%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Frame = +1
Query: 4 KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
KDI LY EL PG+ L G+ Q++N +V HA
Sbjct: 12 KDIAILYFIFAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLV 71
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 351
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 72 MPALIGGFGNYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 58.8 bits (136), Expect = 1e-07
Identities = 21/48 (43%), Positives = 33/48 (68%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGI 785
GGDP+L+QHLF F+ H YI++LP FG++S +++ K FG+ +
Sbjct: 251 GGDPVLFQHLFWFYSHPAVYIMVLPSFGVMSEVVATYSRKNIFGYRAV 298
Score = 58.4 bits (135), Expect = 2e-07
Identities = 51/204 (25%), Positives = 73/204 (35%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG ++ EL PG I D YN T H
Sbjct: 42 HKRIGLMFLFWVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMI 101
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N ++PL+LGA D+AFPR+N + ++ G TG T Y P
Sbjct: 102 PAIPAVFGNFMLPLMLGAKDVAFPRLNLLSL-YIYLAGAVLALWGMLNGGLDTGWTFYTP 160
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
S AH +V +F + G SS ++ ++PLFV A+ T
Sbjct: 161 YS---AHTTTTVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYAT 217
Query: 541 AFXXXXXXXXXAGAITILLTDRNL 612
+ G + +L+T NL
Sbjct: 218 S-CIQVLATPVIGLLLVLVTVENL 240
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 58.8 bits (136), Expect = 1e-07
Identities = 55/227 (24%), Positives = 82/227 (36%), Gaps = 2/227 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDD-QIYNTIVTAHAXXXXXXXX 177
HK +G LY EL G I DD +YNT + H
Sbjct: 14 HKRVGILYLIGSIAAFAVAGIMAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQ 73
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N +PL++GA D+AFPR+N + + + T YP
Sbjct: 74 IPALTGFFANYFIPLMIGAKDVAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYP 133
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
P S I H + FS+ L G +S +++L +FV A +
Sbjct: 134 PYSI-ITHGNTA--FYTFSVLLLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-L 189
Query: 538 TAFXXXXXXXXXAG-AITILLTDRNLNTSFFDXCWXEETQFYINIYF 675
AF G A+T+L D+ + T FFD + Y N+++
Sbjct: 190 AAFVLQLIFVPVLGTAVTMLTFDKYIGTHFFDAAAGGDALTYQNLFW 236
Score = 39.1 bits (87), Expect = 0.13
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGD + YQ+LF F+ H Y++ LP ++ I++ R F + ++
Sbjct: 225 GGDALTYQNLFWFYSHPAVYVIFLPFMAMVFEIVATFARNRVFNYKMVV 273
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 58.4 bits (135), Expect = 2e-07
Identities = 25/45 (55%), Positives = 31/45 (68%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGW 776
GG P+L+QHLF FFGH YI+ LP FGI+S +IS K FG+
Sbjct: 265 GGSPLLFQHLFWFFGHPEVYIVALPAFGIVSDLISTHARKNIFGY 309
Score = 44.0 bits (99), Expect = 0.004
Identities = 47/186 (25%), Positives = 68/186 (36%), Gaps = 5/186 (2%)
Frame = +1
Query: 85 ELGNPGSL-IGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRIN 261
+LG PG+ D Y +T H N L+PL++GA D+ FP +N
Sbjct: 66 QLGFPGTFSFIDANQYLQFITMHGMIMVIYLLTALFLGGFGNYLIPLMVGARDMVFPYVN 125
Query: 262 NIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGRSVDLAIFSLHLAGI 432
+ + V G G G T+YPP + S + + L + SL L I
Sbjct: 126 MLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDWGIVLMLSSLILFII 185
Query: 433 SSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXXXXAGAITILLTDRN 609
+ +LPL V + T G++ +LL DR
Sbjct: 186 GFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPALFVGSVMLLL-DRL 244
Query: 610 LNTSFF 627
L TSFF
Sbjct: 245 LGTSFF 250
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 58.4 bits (135), Expect = 2e-07
Identities = 25/48 (52%), Positives = 32/48 (66%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGI 785
GGDP++YQHLF F+ H YI+ILP FG+IS +I K FG+ I
Sbjct: 236 GGDPVVYQHLFWFYSHPAVYIMILPFFGVISEVIPVHARKPIFGYRAI 283
Score = 56.4 bits (130), Expect = 8e-07
Identities = 55/225 (24%), Positives = 77/225 (34%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG Y EL P ++YN ++T H
Sbjct: 27 HKVIGIQYLVTSFLFFFIGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIV 86
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N L+PL++G D+AFPR+N + F V G T YPP
Sbjct: 87 PAGAAFA-NYLIPLMVGTEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPP 144
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
LS G +L I SL L G SS +PLF A+ T
Sbjct: 145 LSLLSGKWGE--ELWILSLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLAT 202
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYF 675
+ A A+ +L D TSFF+ + Y ++++
Sbjct: 203 SSLILLSTPVLASALILLSFDLIAGTSFFNPVGGGDPVVYQHLFW 247
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 58.0 bits (134), Expect = 3e-07
Identities = 49/209 (23%), Positives = 70/209 (33%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG +Y +LG P + +YN + T H
Sbjct: 31 HKRIGIMYLVSAFVFFLIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLM 90
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N +VPL++GA D+AFPR+N + V G Y P
Sbjct: 91 PLNVGLG-NYMVPLMIGARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAP 149
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
L+ VD I + L G++S + +++PLFV +
Sbjct: 150 LTQKQFAPTAGVDYWIVGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVV 209
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFF 627
AF A LL DR+ T FF
Sbjct: 210 AFILIFAFPVLTVATIQLLFDRHFGTRFF 238
Score = 54.8 bits (126), Expect = 2e-06
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGW 776
GGD +L+QHLF FFGH YILILP GIIS ++ K FG+
Sbjct: 243 GGDAVLWQHLFWFFGHPEVYILILPTMGIISEVLPTFSRKPIFGY 287
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 58.0 bits (134), Expect = 3e-07
Identities = 44/173 (25%), Positives = 68/173 (39%), Gaps = 4/173 (2%)
Frame = +1
Query: 121 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 300
+ Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 86 EFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAFFF 145
Query: 301 XXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXX 468
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 146 FGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYMTT 205
Query: 469 XXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
+ +LPL + A+ ITA A ++L DR + T FF
Sbjct: 206 IIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFF 258
Score = 50.8 bits (116), Expect = 4e-05
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGW 776
GG P+L+QHLF F+ H YI+ILP G++S I++ K FG+
Sbjct: 274 GGQPLLWQHLFWFYSHPAVYIMILPAMGMVSDILACFSRKPIFGY 318
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 57.2 bits (132), Expect = 4e-07
Identities = 49/210 (23%), Positives = 74/210 (35%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG ++ EL PG I D YN + T H
Sbjct: 35 HKRIGVMFLVATTISFALGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMI 94
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N L+P+++GA D+AFP++N + F +V+ GA TG T Y P
Sbjct: 95 PAIPSGFGNFLLPIMIGAKDVAFPKLNLLSF-YVYLAGAVVALFGMVQGGADTGWTFYTP 153
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
S+ + V L F L G SS + +LPLFV ++ T
Sbjct: 154 YSTTTITKVVPVLLGAFIL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYAT 210
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFD 630
+ ++ ++ + FD
Sbjct: 211 SVIQILATPVLGMSLLLVAVEHAFGWGIFD 240
Score = 52.4 bits (120), Expect = 1e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGI 785
GGDP+L+QH F F+ H YI++LP +IS ++ K FG+ +
Sbjct: 244 GGDPVLFQHFFWFYSHPAVYIMVLPAMAVISEVVCAFSRKNIFGYKAV 291
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 56.4 bits (130), Expect = 8e-07
Identities = 53/228 (23%), Positives = 81/228 (35%), Gaps = 1/228 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXX 177
HK IG Y +L P + IG D+ YN I T H
Sbjct: 29 HKIIGRRYTVTAFVFLALGGVLALLMRLQLAQPEARFIGPDR-YNQIFTMHGSNMMFLFA 87
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
LVPL++G IAFPR+N + V+ G G Y
Sbjct: 88 VPVMQAMAIY-LVPLMVGTRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYV 146
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PLS G+ D+ + +S+ S D++PLFV ++ +
Sbjct: 147 PLSGPQYAAGKRADIWAQMITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLV 206
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
T+F A T L+ DR + T FF+ + + ++++ F
Sbjct: 207 TSFLVILAMPAIMIASTSLILDRLVGTHFFNPAEGGDVLLWQHLFWFF 254
Score = 56.0 bits (129), Expect = 1e-06
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIM 791
GGD +L+QHLF FFGH YI+ LP G++S I++ ++ FG+L ++M
Sbjct: 241 GGDVLLWQHLFWFFGHPEVYIIFLPAVGMVSSIVATFTQRPVFGYLAMVM 290
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 56.4 bits (130), Expect = 8e-07
Identities = 22/47 (46%), Positives = 32/47 (68%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGI 785
GDP L+QH+F FFGH YIL+LP G++S +I + +R +G+ I
Sbjct: 236 GDPRLFQHIFWFFGHPEVYILVLPAMGLVSEVIQRMARRRAYGYTAI 282
Score = 50.4 bits (115), Expect = 5e-05
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 1/142 (0%)
Frame = +1
Query: 205 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 381
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 382 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 561
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 562 XXXXAGAITILLTDRNLNTSFF 627
A +LL +R+L FF
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFF 225
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 56.4 bits (130), Expect = 8e-07
Identities = 48/211 (22%), Positives = 72/211 (34%), Gaps = 1/211 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK +G +Y AEL PG ++ +N + T H
Sbjct: 38 HKQLGIMYIIMSFSFFFLGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGT 97
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYP 357
N ++PL +GAPD+AFPR+N F + GA G T+Y
Sbjct: 98 PIVWGFA-NYVLPLQIGAPDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYS 156
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
PLS I G D+ I + GI S + ++P+F + +
Sbjct: 157 PLSDAIHSPGLGSDMWIVGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFV 216
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFD 630
+ A +L DR L +D
Sbjct: 217 VSVLALLIFPLLLAAALGVLYDRKLGGHLYD 247
Score = 56.4 bits (130), Expect = 8e-07
Identities = 26/51 (50%), Positives = 33/51 (64%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIMLT 797
G +L+QHLF FFGH Y+L LP FGI+S II K FG++G+I T
Sbjct: 251 GGSLLWQHLFWFFGHPEVYVLALPFFGIVSEIIPVFSRKPMFGYVGLIFAT 301
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 55.6 bits (128), Expect = 1e-06
Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 3/184 (1%)
Frame = +1
Query: 85 ELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINN 264
EL P + + D +YN + T H N L+P ++GAPD+AFP++N
Sbjct: 64 ELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMIGAPDMAFPKLNA 122
Query: 265 IRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVDLAIFSLHLAGIS 435
F G A +G YPP+S + + H L I ++ L+GIS
Sbjct: 123 AAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEFLWILAVALSGIS 182
Query: 436 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 615
S F ++P+FV G +LL D +
Sbjct: 183 SIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTGGAVMLLFDLSFG 242
Query: 616 TSFF 627
TSFF
Sbjct: 243 TSFF 246
Score = 52.0 bits (119), Expect = 2e-05
Identities = 21/45 (46%), Positives = 28/45 (62%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGW 776
GGDP+L+QH F F+ H Y+L+LP FGI S + K FG+
Sbjct: 251 GGDPVLFQHFFWFYSHPAVYVLVLPVFGIFSELFPVYARKPLFGY 295
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 55.2 bits (127), Expect = 2e-06
Identities = 23/49 (46%), Positives = 34/49 (69%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIM 791
GDPIL+QHLF FFGH YI+ +P G++S II ++ FG++ I++
Sbjct: 248 GDPILWQHLFWFFGHPEVYIIFIPALGMVSSIIITFTQRPIFGYIPIVL 296
Score = 40.7 bits (91), Expect = 0.042
Identities = 31/139 (22%), Positives = 50/139 (35%)
Frame = +1
Query: 211 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 390
++PL+LG D+ FPR+N + ++ G YPPL+ G
Sbjct: 105 IIPLMLGTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGL 164
Query: 391 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 570
+D + IS+ S +++P+FV AV + +F
Sbjct: 165 GLDFYTTVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPP 224
Query: 571 XAGAITILLTDRNLNTSFF 627
A +L DR FF
Sbjct: 225 LVIASLMLALDRMAGMHFF 243
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 54.4 bits (125), Expect = 3e-06
Identities = 27/59 (45%), Positives = 34/59 (57%)
Frame = +3
Query: 624 F*XLLXGGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIMLTS 800
F +L GG + YQHLF FGH YILILP GIIS +I K FG+ ++ T+
Sbjct: 239 FFEVLRGGSVVFYQHLFWTFGHPEVYILILPAMGIISEVIPVHARKMLFGYSVMVFSTA 297
Score = 48.0 bits (109), Expect = 3e-04
Identities = 47/231 (20%), Positives = 78/231 (33%), Gaps = 4/231 (1%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG +Y +L PG + + +N + T HA
Sbjct: 29 HKRIGIMYGVTGFFFFLVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVM 88
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*T 348
N +PL++GA D+AFPR+N + ++ G G
Sbjct: 89 PLLSAFM-NYFLPLMIGARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWF 147
Query: 349 VYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*A 528
Y L+S G D L L GI + + ++P+FV
Sbjct: 148 GYANLTSVQFTSGLGPDFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWT 207
Query: 529 VGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
+T+ A+ +L+ DR +FF+ FY ++++ F
Sbjct: 208 TLVTSAIIIFAFPSVTVALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTF 258
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 54.0 bits (124), Expect = 4e-06
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIM 791
GG P+L+Q LF FFGH YILILP G++S ++ + + FG+ I +
Sbjct: 223 GGSPVLWQQLFWFFGHPEVYILILPAMGLVSELLPKMARREIFGYTAIAL 272
Score = 34.7 bits (76), Expect = 2.7
Identities = 34/143 (23%), Positives = 53/143 (37%), Gaps = 1/143 (0%)
Frame = +1
Query: 205 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAH 381
N LVP ++GA D+ +P+IN + F ++ G +Y PLS +
Sbjct: 80 NYLVPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVN 138
Query: 382 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 561
G +L +L L+G+SS + ++PLFV TA
Sbjct: 139 YGLGTNLIQIALILSGLSS--TLTGVNFVMTITKMKKVPYLKMPLFVWGFFTTAILMIIA 196
Query: 562 XXXXAGAITILLTDRNLNTSFFD 630
+ +R T FFD
Sbjct: 197 MPSLTAGLVFAYLERLWGTPFFD 219
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 53.6 bits (123), Expect = 6e-06
Identities = 23/41 (56%), Positives = 28/41 (68%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKR 764
GGDPIL QHLF FFGH Y+LI+P FG I+ I+ +R
Sbjct: 386 GGDPILSQHLFWFFGHPEVYVLIIPTFGFINMIVPHNNTRR 426
Score = 37.9 bits (84), Expect = 0.29
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 85 ELGNPGSLI--GDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRI 258
EL +P S GD Y +VTAH N L+P +G+ D+A+PR+
Sbjct: 88 ELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFANFLIPYHVGSKDVAYPRL 147
Query: 259 NNIRF 273
N+I F
Sbjct: 148 NSIGF 152
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 53.6 bits (123), Expect = 6e-06
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GG+ ++++HLF FGH YILILP FGI S +I KR FG+ ++
Sbjct: 234 GGNTVIWEHLFWIFGHPEVYILILPAFGIFSEVIPVFARKRLFGYSSMV 282
Score = 51.2 bits (117), Expect = 3e-05
Identities = 43/227 (18%), Positives = 78/227 (34%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK I LY +L P + Q YN ++T H
Sbjct: 24 HKKIAILYLVAGGFFFLVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAM 83
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N +VPL +GA D++FP +N + F + G T Y
Sbjct: 84 PLLFALM-NAVVPLQIGARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYAS 142
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
LS + +G +D + L ++G+ + ++ +LPLF +
Sbjct: 143 LS--LHSKGHGIDFFVLGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVA 200
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
+ + +++ DR T+FF+ T + ++++ F
Sbjct: 201 SALILFAFPPLTVGLALMMLDRLFGTNFFNPELGGNTVIWEHLFWIF 247
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 53.2 bits (122), Expect = 7e-06
Identities = 39/157 (24%), Positives = 60/157 (38%)
Frame = +1
Query: 205 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 384
N +VPL +GA D+AFP +N++ F V N A TG YPPL+
Sbjct: 125 NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVNLSLGVGNFARTGWVAYPPLAELGFSP 184
Query: 385 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 564
VD I++L ++GI + +P+F
Sbjct: 185 DVGVDYYIWALQISGIGTTLTAINFLVTVIKMRAPGMKLMDMPIFTWTCTWANVLIATSF 244
Query: 565 XXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYF 675
GA+ +L DR L+ FF Y+N+++
Sbjct: 245 PILTGALAMLALDRYLDFHFFTAELGGNAMMYLNLFW 281
Score = 47.2 bits (107), Expect = 5e-04
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GG+ ++Y +LF +GH YIL+LP FGI S ++S KR FG +I
Sbjct: 270 GGNAMMYLNLFWAWGHPEVYILVLPAFGIFSEVVSTFAGKRLFGHKSMI 318
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 53.2 bits (122), Expect = 7e-06
Identities = 22/49 (44%), Positives = 31/49 (63%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GG P+L+QHLF F GH YI+++P GI S +I+ K FG+ +I
Sbjct: 287 GGSPVLFQHLFWFLGHPEVYIVLIPALGITSEVIATNARKPIFGYKAMI 335
Score = 50.8 bits (116), Expect = 4e-05
Identities = 44/175 (25%), Positives = 68/175 (38%), Gaps = 4/175 (2%)
Frame = +1
Query: 115 DDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 294
+ + Y +VT H N L+PL +GA D+A +N + +
Sbjct: 98 EPEFYLALVTMHGTIMVFFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSS 157
Query: 295 XXXXXXXIVENGAGTG*-TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 462
+E G +G +YPPLS+ ++ G + + + S+ L IS
Sbjct: 158 VIMFASIFLETGPASGSWVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYI 217
Query: 463 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
SF +LPL + A ITA A +L+ DR+L TSFF
Sbjct: 218 TTVINLRVKGMSFTRLPLTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFF 272
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 52.4 bits (120), Expect = 1e-05
Identities = 47/211 (22%), Positives = 72/211 (34%), Gaps = 1/211 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG +Y +L P + + YN I+T H
Sbjct: 24 HKKIGLMYTATAFFAFALAGVFSLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFII 83
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYP 357
N +VPL+LGA D+A PR+N + GA G T Y
Sbjct: 84 QAGLTGFGNFVVPLMLGARDVALPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYY 143
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
P S A VD + ++ L G SS S ++P++V +V
Sbjct: 144 PFS---AQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFA 200
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFD 630
+ A ++L +R + S+F+
Sbjct: 201 ASVLNLFSLAGLTAATLLVLLERKIGLSWFN 231
Score = 46.0 bits (104), Expect = 0.001
Identities = 18/45 (40%), Positives = 28/45 (62%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGW 776
GGDP+L+Q F F+ H Y+++LP GI++ + S K FG+
Sbjct: 235 GGDPVLFQQFFWFYSHPTVYVMLLPYLGILAEVASTFARKPLFGY 279
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 50.4 bits (115), Expect = 5e-05
Identities = 21/34 (61%), Positives = 25/34 (73%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHII 743
GG +L+QHLF FFGH YI ILP GI+SHI+
Sbjct: 273 GGSALLWQHLFWFFGHPEVYIAILPAMGIVSHIL 306
Score = 35.1 bits (77), Expect = 2.1
Identities = 41/184 (22%), Positives = 67/184 (36%), Gaps = 5/184 (2%)
Frame = +1
Query: 91 GNPGSLIGDDQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 270
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 271 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 435
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 436 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 615
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 616 TSFF 627
TSFF
Sbjct: 254 TSFF 257
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 50.4 bits (115), Expect = 5e-05
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHII 743
GGDP+L+QHLF FFGH YI+ LP G++S I+
Sbjct: 251 GGDPLLWQHLFWFFGHPEVYIIFLPAAGLVSMIV 284
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 50.0 bits (114), Expect = 7e-05
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHII 743
GGDP+L+QHLF FFGH YI+ LP G++S I+
Sbjct: 310 GGDPLLWQHLFWFFGHPEVYIIFLPAAGMVSMIV 343
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 49.2 bits (112), Expect = 1e-04
Identities = 37/157 (23%), Positives = 57/157 (36%)
Frame = +1
Query: 205 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 384
N VPL +GA D+AFP +N++ F V A TG YPPL+
Sbjct: 124 NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVNISLGVGEFAKTGWVAYPPLAGIQYSP 183
Query: 385 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 564
G VD I++L L+G+ + +P+F
Sbjct: 184 GVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRAPGMKLMDMPIFTWTCTWANVLIVASF 243
Query: 565 XXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYF 675
A+ +L DR L+ F Y+N+++
Sbjct: 244 PILTAALALLTVDRYLDFHIFTNELGGNPMMYVNLFW 280
Score = 48.4 bits (110), Expect = 2e-04
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFG 773
GG+P++Y +LF +GH YILILP FG+ S + S KR FG
Sbjct: 269 GGNPMMYVNLFWAWGHPEVYILILPAFGVFSEVTSTFAGKRLFG 312
>UniRef50_P29649 Cluster: Cytochrome c oxidase subunit 1; n=441;
Bilateria|Rep: Cytochrome c oxidase subunit 1 - Pantodon
buchholtzi (Butterflyfish)
Length = 184
Score = 48.8 bits (111), Expect = 2e-04
Identities = 21/38 (55%), Positives = 29/38 (76%), Gaps = 1/38 (2%)
Frame = +3
Query: 678 FFGHXGSYILILPGFGIISHIISQKEEKRN-FGWLGII 788
FFGH YILILPGFG+ISHI++ K+ FG++G++
Sbjct: 2 FFGHPEVYILILPGFGMISHIVAYYSGKKEPFGYMGMV 39
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 48.4 bits (110), Expect = 2e-04
Identities = 34/155 (21%), Positives = 60/155 (38%)
Frame = +1
Query: 205 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 384
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 385 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 564
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 565 XXXAGAITILLTDRNLNTSFFDXCWXEETQFYINI 669
+ + DR L+T F+ + + YIN+
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINL 273
Score = 44.8 bits (101), Expect = 0.003
Identities = 24/52 (46%), Positives = 30/52 (57%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIMLT 797
GG +LY +L +GH YILILP FGI S IIS K F ++ +I T
Sbjct: 264 GGQQMLYINLIWAWGHPEVYILILPSFGIFSEIISYICVKSVFSYISLIYAT 315
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/53 (39%), Positives = 33/53 (62%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIMLTS 800
GG P+L+QHLF F+ H YI++LP G++S ++S K FG+ ++ S
Sbjct: 277 GGQPLLWQHLFWFYSHPAVYIMLLPIMGMVSDMLSCMCRKPLFGYKPMVFSMS 329
Score = 41.5 bits (93), Expect = 0.024
Identities = 36/172 (20%), Positives = 57/172 (33%), Gaps = 3/172 (1%)
Frame = +1
Query: 121 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 300
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 301 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 471
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 472 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
+F +LP+ + + ITA + + DR T FF
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFF 261
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 48.0 bits (109), Expect = 3e-04
Identities = 52/226 (23%), Positives = 81/226 (35%), Gaps = 1/226 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS-LIGDDQIYNTIVTAHAXXXXXXXX 177
H D+G LY AEL PG+ I D +N + T H
Sbjct: 20 HTDVGLLYLISSLGFLFLGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFI 79
Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
N VP+++ D+A+P++N I F + T P
Sbjct: 80 LPFASAVG-NYFVPIMVRYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----P 133
Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
P S I+ G + D+ IF L + GISS S Q+PL +
Sbjct: 134 PYSV-ISAPGPAADMWIFGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLS 192
Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYF 675
++ A A+ +LLTDR + FF+ + Y ++++
Sbjct: 193 SSLIVLVALPTFAAALLMLLTDRLGVSGFFNPAVGGDPIAYAHLFW 238
Score = 41.5 bits (93), Expect = 0.024
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEK----RNFGWLGIIMLT 797
GGDPI Y HLF F H Y+L++P G++ ++ + K N G ++LT
Sbjct: 227 GGDPIAYAHLFWFTFHPEVYVLVIPAIGMMYEMVPRFSRKPIYSYNSGLFAFVLLT 282
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 47.2 bits (107), Expect = 5e-04
Identities = 22/52 (42%), Positives = 32/52 (61%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIMLT 797
GG+ +LY +LF +GH Y ++LP FG IS II EK FG+ +++ T
Sbjct: 288 GGNLMLYTNLFWIWGHPEVYFVVLPAFGFISEIIPTFAEKPLFGYATMVIAT 339
Score = 34.3 bits (75), Expect = 3.6
Identities = 32/157 (20%), Positives = 55/157 (35%)
Frame = +1
Query: 205 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 384
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 385 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 564
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 565 XXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYF 675
A+ +L DR L T FF Y N+++
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFW 299
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 47.2 bits (107), Expect = 5e-04
Identities = 20/35 (57%), Positives = 23/35 (65%)
Frame = +3
Query: 522 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF 626
M C +YS +TC WSYYN IN SKLKYI+F
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILF 118
>UniRef50_Q6RJT8 Cluster: Cytochrome c oxidase subunit 2; n=1;
Harmonia axyridis|Rep: Cytochrome c oxidase subunit 2 -
Harmonia axyridis (Multicolored Asian lady beetle)
Length = 193
Score = 47.2 bits (107), Expect = 5e-04
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +2
Query: 665 TFILIFWTXWKLYFNFTRIWXNFSYYFXER-GKKKLWVVRNN 787
+ ++IFW+ LYFN IW NF YY+ + GK LW NN
Sbjct: 2 SLVMIFWSSSSLYFNSPSIWYNFPYYYTSKSGKNCLWFFSNN 43
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 46.8 bits (106), Expect = 6e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGW 776
GGDP+L+QHLF FGH YI+ LP G+++ ++ K FG+
Sbjct: 267 GGDPLLWQHLFWLFGHPEVYIIFLPAAGMVATMLPTFVGKPLFGY 311
Score = 43.2 bits (97), Expect = 0.008
Identities = 32/140 (22%), Positives = 53/140 (37%)
Frame = +1
Query: 211 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 390
L+PL++GA D+ FPR+ + + + G +Y PLS++ G
Sbjct: 124 LIPLMIGARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGL 183
Query: 391 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 570
S D + + LA I+S S ++P+ + + TAF
Sbjct: 184 SADFWLIGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPP 243
Query: 571 XAGAITILLTDRNLNTSFFD 630
+L +R L FFD
Sbjct: 244 LIIGSILLEAERLLGLPFFD 263
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 46.0 bits (104), Expect = 0.001
Identities = 45/211 (21%), Positives = 71/211 (33%), Gaps = 2/211 (0%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HKDIG LY EL + G+ + YN V+ H
Sbjct: 22 HKDIGVLYLITALFFLVFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFIS 81
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N LVPL +GA D+AFPR+N + + G T+Y P
Sbjct: 82 PFAFGFA-NYLVPLQIGADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAP 140
Query: 361 LS--SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVG 534
L+ + I G + +L + + +P+F ++
Sbjct: 141 LNTPAYIPGEGLGATSVVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSIN 200
Query: 535 ITAFXXXXXXXXXAGAITILLTDRNLNTSFF 627
+T + A+ IL +D L T++F
Sbjct: 201 LTVWMMLFAFAALLAALMILASDHILGTTYF 231
Score = 35.5 bits (78), Expect = 1.6
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFG--WLGIIML 794
G +L+ HLF FFGH YI+ P G+++ +R G W I M+
Sbjct: 248 GASLLWAHLFWFFGHPEVYIVFFPALGVMAECFQTFTGRRLVGRKWFIISMV 299
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 45.2 bits (102), Expect = 0.002
Identities = 39/159 (24%), Positives = 58/159 (36%)
Frame = +1
Query: 205 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 384
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 385 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 564
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 565 XXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
L DR L+ FF ++N+++ F
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLF 302
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/52 (40%), Positives = 30/52 (57%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIMLT 797
GG+ + + ++F FGH YILILP FG+ S I S K FG+ ++ T
Sbjct: 289 GGNQMNFLNMFWLFGHPEVYILILPAFGVYSEIFSTFSGKVLFGYKSLVWAT 340
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 45.2 bits (102), Expect = 0.002
Identities = 46/210 (21%), Positives = 69/210 (32%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG Y +L P + + Y+++ T H
Sbjct: 49 HKRIGLRYIVTAFVFLLLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYAL 108
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N L PL+LG+ D+AFPR+ + + G Y P
Sbjct: 109 PVLSGFA-NYLWPLMLGSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVP 167
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
L+S G ++D+ + L GIS+ S D+LP+ V
Sbjct: 168 LTSLDYSAGANIDIYGLGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTA 227
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFD 630
+ + A +L DRN T FFD
Sbjct: 228 SVSNLVAVPSVSLAFLLLWLDRNAGTHFFD 257
Score = 42.3 bits (95), Expect = 0.014
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIIS 734
GG P+L+QHLF F H Y+++LP GI+S
Sbjct: 261 GGRPLLWQHLFWMFAHPWVYVVVLPAMGIVS 291
>UniRef50_Q6TP93 Cluster: Cytochrome c oxidase subunit I; n=2;
Bruchidius|Rep: Cytochrome c oxidase subunit I -
Bruchidius aff. varius GLK-2003
Length = 339
Score = 45.2 bits (102), Expect = 0.002
Identities = 22/31 (70%), Positives = 26/31 (83%), Gaps = 1/31 (3%)
Frame = +3
Query: 699 YILILPGFGIISHIISQKEEKRN-FGWLGII 788
YILILPGFG+ISHIISQ+ K+ FG LG+I
Sbjct: 157 YILILPGFGMISHIISQESGKKEAFGTLGMI 187
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 44.8 bits (101), Expect = 0.003
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHI--ISQKEEKRNFGWL 779
GGD +L+QHLF FGH YI+ LP G IS I + + +GW+
Sbjct: 241 GGDALLWQHLFWLFGHPEVYIIFLPAAGAISTILPVMARTGLLGYGWI 288
Score = 43.6 bits (98), Expect = 0.006
Identities = 42/227 (18%), Positives = 74/227 (32%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
H D+G ++ A+L P S + YN + T H
Sbjct: 29 HTDLGRMFLTVAVFFFVVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAI 88
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
L+P +LG+ D+AFPR+ F + +G +YPP
Sbjct: 89 PVFEGFAVY-LLPKLLGSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPP 147
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGIT 540
LSS + G + D + + IS+ S ++P+F +T
Sbjct: 148 LSSTLGAPGINSDFWLIGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVT 207
Query: 541 AFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
A +L +R + FF + + ++++ F
Sbjct: 208 AVMILTGFPPLILGSILLELERAFDMPFFQAAAGGDALLWQHLFWLF 254
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
GGD +L+QHLF FGH YI+ LP G IS I+ G+ ++
Sbjct: 241 GGDSLLWQHLFWLFGHPEVYIIFLPAAGAISTILPVMARTELIGYRWVV 289
Score = 40.3 bits (90), Expect = 0.055
Identities = 32/173 (18%), Positives = 59/173 (34%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
H D+G ++ A+L +P S + Y + T H
Sbjct: 29 HTDLGRMFLGASVVFFLIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAI 88
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
L+P +LG+ D+A+PR++ F + +G +YPP
Sbjct: 89 PMFEGLTIY-LLPKMLGSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPP 147
Query: 361 LSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLF 519
L+S + G + D + + IS+ S D++P++
Sbjct: 148 LASTLGSPGINSDFWLLGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIY 200
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 44.0 bits (99), Expect = 0.004
Identities = 34/123 (27%), Positives = 41/123 (33%)
Frame = +3
Query: 249 PTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YRT*RKIRRSCYFFTTFSX 428
P NK +KIL TPL Y N C K C + +NSLP Y T R +F T
Sbjct: 79 PPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYLTLGPFRSYNHFCPTSCS 138
Query: 429 XXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXXXTTCFSWSYYNIINRSK 608
CM +YS + S+YNI K
Sbjct: 139 SVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTSFSPSIGSSHYNITYWPK 198
Query: 609 LKY 617
KY
Sbjct: 199 PKY 201
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 43.6 bits (98), Expect = 0.006
Identities = 19/50 (38%), Positives = 29/50 (58%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGIIM 791
GGDP+L+QHLF FGH YI+ LP + + I+ + G+ I++
Sbjct: 267 GGDPLLWQHLFWIFGHPEVYIIFLPLIALAAMIVPTAARQPIVGYSWIVL 316
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 43.2 bits (97), Expect = 0.008
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGW 776
GG P+LYQ F F+ H Y+++LP GI + + S K FG+
Sbjct: 243 GGVPVLYQQFFWFYSHPAVYVMLLPYLGIGAEVASTMARKPLFGY 287
Score = 37.9 bits (84), Expect = 0.29
Identities = 33/143 (23%), Positives = 44/143 (30%)
Frame = +1
Query: 1 HKDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGSLIGDDQIYNTIVTAHAXXXXXXXXX 180
HK IG LY +L P + YN ++T HA
Sbjct: 32 HKKIGLLYIIVSILGFCLGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLI 91
Query: 181 XXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPP 360
N +PL LG D+A PR+N G T Y P
Sbjct: 92 PLGLFGFGNYFLPLQLGVRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYP 151
Query: 361 LSSNIAHRGRSVDLAIFSLHLAG 429
L+ + G SV + L+ G
Sbjct: 152 LTMDGNQTGVSVFMVAVILNGLG 174
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 42.3 bits (95), Expect = 0.014
Identities = 32/88 (36%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Frame = +1
Query: 502 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEE--TQFYINIYF 675
DQ+ LF ++ IT AG IT+LL+DRN N FF E Y+ F
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 676 DFLDXL-EVIF*FYQDLX*FLILFXRKR 756
D L ++F FYQDL F L+ K+
Sbjct: 72 GHTDVLFLILFWFYQDLDLFRKLWWMKK 99
>UniRef50_Q9TCV5 Cluster: Cytochrome c oxidase subunit I; n=6;
Digenea|Rep: Cytochrome c oxidase subunit I -
Echinostoma hortense
Length = 154
Score = 40.3 bits (90), Expect = 0.055
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +3
Query: 678 FFGHXGSYILILPGFGIISHI-ISQKEEKRNFGWLGIIM 791
FFGH Y+LILP FGI+SHI ++ FG+ G+++
Sbjct: 1 FFGHPEVYVLILPVFGIVSHICMTFTNNDSLFGYYGLVL 39
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 40.3 bits (90), Expect = 0.055
Identities = 35/140 (25%), Positives = 52/140 (37%), Gaps = 1/140 (0%)
Frame = +1
Query: 211 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRG 387
L+PL +G+ D+ +PR+N + + + G TG TVY PLSS
Sbjct: 111 LIPLAIGSRDMIYPRMNALGYWLFLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPY 170
Query: 388 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 567
D A ++ L GI + LPLFV AV A
Sbjct: 171 LGADTAAAAVVLRGIGTIIASTEILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFP 230
Query: 568 XXAGAITILLTDRNLNTSFF 627
G +LL ++ S++
Sbjct: 231 EITGLFFLLLVGNLMHASYY 250
Score = 34.3 bits (75), Expect = 3.6
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 645 GDPILYQHLF*FFGHXGSYILILPGFGIISHIIS 746
G +++++LF +FGH Y+L+LPG G + +S
Sbjct: 255 GGALMWENLFWYFGHPEVYLLLLPGTGAMFDYLS 288
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 37.1 bits (82), Expect = 0.51
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +1
Query: 385 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 564
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 565 XXXAGAITILLTDRNLNT 618
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_A1CK37 Cluster: Glycosyl hydrolases family 16, putative;
n=7; Eurotiomycetidae|Rep: Glycosyl hydrolases family
16, putative - Aspergillus clavatus
Length = 363
Score = 33.9 bits (74), Expect = 4.8
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 651 PILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGW 776
P + + F FFG S+I + G GIIS ++ Q +++ W
Sbjct: 81 PTMQSNFFIFFGIVESHIKVAKGKGIISSVVLQSDDRDEIDW 122
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,859,170
Number of Sequences: 1657284
Number of extensions: 10212911
Number of successful extensions: 23453
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 21569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23210
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68731504465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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