Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0298
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...   127   2e-30
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    27   4.1  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.5  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score =  127 bits (306), Expect = 2e-30
 Identities = 78/228 (34%), Positives = 103/228 (45%), Gaps = 2/228 (0%)
 Frame = +1

Query: 4   KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 177
           KDI  LY                    EL  PGS  L G+ Q+YN  ++AH         
Sbjct: 18  KDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFI 77

Query: 178 XXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYP 357
                    N LVPL++GAPD+A+PR+NN  F              + E G G G TVYP
Sbjct: 78  IPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYP 137

Query: 358 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 537
           PLSS  +H G ++DLAI SL L GISS                   S  Q+PLF  A+ I
Sbjct: 138 PLSSITSHSGPAIDLAILSLQLTGISSTLGSVNLIATMINMRAPGLSLYQMPLFAWAIMI 197

Query: 538 TAFXXXXXXXXXAGAITILLTDRNLNTSFFDXCWXEETQFYINIYFDF 681
           T+          AG + +L +DRNLNTSF+      +   Y ++++ F
Sbjct: 198 TSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFF 245



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 29/49 (59%), Positives = 35/49 (71%)
 Frame = +3

Query: 642 GGDPILYQHLF*FFGHXGSYILILPGFGIISHIISQKEEKRNFGWLGII 788
           GGDP+LYQHLF FFGH   YILI+P FG++SHII     K  FG  G++
Sbjct: 232 GGDPVLYQHLFWFFGHPEVYILIMPAFGVVSHIIPSLAHKPIFGKEGML 280


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 654 ILYQHLF*FFGHXGSYILILPGF 722
           +L QHLF + GH G+Y L+L G+
Sbjct: 117 MLKQHLFRYQGHIGAY-LVLGGY 138


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 276 TPTPLPYIINFKKNCRKWCRNRMNS 350
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,556,024
Number of Sequences: 5004
Number of extensions: 43304
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)