Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0297
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...   121   1e-28
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    28   1.8  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    27   3.1  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    27   3.1  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    27   4.1  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   5.4  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   5.4  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    25   9.5  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score =  121 bits (291), Expect = 1e-28
 Identities = 55/127 (43%), Positives = 89/127 (70%)
 Frame = +3

Query: 12  EIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFYDM 191
           EI+QLVGK++L+ETDK+TL++A ++K+DFLQQN YS YDR CP YKT  M++N+I +Y  
Sbjct: 499 EIIQLVGKSALSETDKVTLDIAGIIKNDFLQQNGYSDYDRCCPLYKTYHMMRNMIAYYTK 558

Query: 192 SRHAVESTAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSA 371
           ++ AVE+       V W+ I+++  ++ Y+L+SMKF++P  +GE +I   ++ L + +  
Sbjct: 559 AKSAVET-----GSVPWSKIKESTSDIFYELTSMKFENP-NEGEKEIVEHYETLHKKIED 612

Query: 372 AFRNLED 392
            F  L +
Sbjct: 613 KFHTLTE 619


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 382 LRKAADISSKSWSKSALILGSPSFTGSLNFMEESW*STLPMASRMTFH 239
           L +AA +SS  WS + L+L + S +  L ++  +      MA+ + FH
Sbjct: 153 LGQAAGVSSTDWSCAQLLLAAVSISTDLKYIPTNQHIVGVMAAVIVFH 200


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = +2

Query: 71  GRQAAQRRLPATEQLFVVRSLLPVLQDGGHAEEHHHVLRHVAARGGVHGAVRQQGHVERH 250
           G  A +R  PAT +   V+        G H  + H    +VAA+ G +   R+Q   E H
Sbjct: 18  GLHAMERYKPATSESLYVKG-----HYGPHPHKEHPAA-YVAAKTGFNATSRRQSVREHH 71

Query: 251 PRRHGQRAL 277
               G   L
Sbjct: 72  SSHEGSAQL 80


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +3

Query: 336 ADFDQLLEDMSAAFRNLED*TLYCL*NIIVIETLKFTEINFN-VKRKYSE*PKLILCVVA 512
           A FD +L++     + L+   L      I+   L   +   N VK  +++  +L+ C   
Sbjct: 427 ASFDMVLDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELV-CSFV 485

Query: 513 NIIDILSSQHRL*LRTKECNVIIEL 587
           N + ++ S     LRT  C  I+ L
Sbjct: 486 NNVAVMESSSEKQLRTSRCLKIVRL 510


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -1

Query: 383 VAESGRHIF*KLVEIGLDLRFTVFHWVLELHGGELVEHVAHGVAD 249
           V ES   I+  L  +G+DL    FHW L ++   L  +++  + D
Sbjct: 643 VKESLPEIYSHLELLGVDLDAISFHWFLSVYTDTLPTNISFRIFD 687


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 727 KRQRAPLYIFRSRCSDAFY*RTXV 798
           KR RAPLYI  + CS  ++ R+ +
Sbjct: 7   KRLRAPLYIQNAYCSKNYFYRSFI 30


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -1

Query: 188 VVERDDVLQHAHRLVERAEAIV 123
           +V+ DD LQ A++ VER E+++
Sbjct: 1   MVQLDDALQDAYKKVEREESLI 22


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -1

Query: 365 HIF*KLVEIGLDLRFTVFHWVLEL 294
           H++ K++E+ +DL+    +W   L
Sbjct: 360 HLYQKIIELDMDLKLITINWFFSL 383


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,163
Number of Sequences: 5004
Number of extensions: 57045
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)