Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0297
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 151 6e-37
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 148 4e-36
02_04_0312 - 21942310-21943356 31 1.1
11_06_0152 + 20669949-20670326,20670887-20670997,20671079-206712... 29 4.3
01_06_0489 + 29754298-29754549,29754639-29754772,29755667-297557... 29 4.3
11_04_0037 - 12642141-12642239,12643352-12643618,12643682-126437... 29 5.7
01_07_0369 - 43111835-43111882,43112172-43112245,43112670-431127... 29 5.7
11_02_0053 - 7797580-7798731 28 7.5
07_03_0333 - 16888606-16888740,16889463-16889570,16889691-168897... 28 7.5
06_01_0313 - 2250312-2250516,2250585-2250610,2250792-2251076,225... 28 7.5
06_03_0501 + 21476715-21476785,21477045-21477786,21478097-214782... 28 9.9
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 151 bits (366), Expect = 6e-37
Identities = 71/131 (54%), Positives = 101/131 (77%), Gaps = 1/131 (0%)
Frame = +3
Query: 3 DLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITF 182
DL+EIVQLVGK +LAE+DKITLE AKLL++D+L QN+++ YD+FCPFYK+V M++NII F
Sbjct: 508 DLNEIVQLVGKDALAESDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHF 567
Query: 183 YDMSRHAVESTAQSD-NKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLE 359
++ AVE A +D K+T++VI+ MG++ Y+L S KF+DP +GE + A F +L +
Sbjct: 568 NTLANQAVERAANADGQKITYSVIKHRMGDLFYRLVSQKFEDPA-EGEDVLVAKFQKLYD 626
Query: 360 DMSAAFRNLED 392
D++ FRNLED
Sbjct: 627 DLTTGFRNLED 637
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 148 bits (359), Expect = 4e-36
Identities = 70/131 (53%), Positives = 102/131 (77%), Gaps = 1/131 (0%)
Frame = +3
Query: 3 DLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITF 182
DL+EIVQLVGK +LAE+DKITLE AKLL++D+L QN+++ YD++CPFYK+V M++NII F
Sbjct: 497 DLNEIVQLVGKDALAESDKITLETAKLLREDYLAQNAFTPYDKYCPFYKSVWMMRNIIHF 556
Query: 183 YDMSRHAVESTAQSD-NKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLE 359
++ AVE A +D K+T++VI+ MG++ Y+L S KF+DP +G+ + A F +L +
Sbjct: 557 NTLATQAVERAAGADGQKITYSVIKHRMGDLFYRLVSQKFEDPA-EGKEVLIAKFQKLYD 615
Query: 360 DMSAAFRNLED 392
D++A FRNLED
Sbjct: 616 DLTAGFRNLED 626
>02_04_0312 - 21942310-21943356
Length = 348
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +2
Query: 17 RAAGRQGVPRGN*QDHARGRQAAQR---RLPATEQLFVVRS 130
RAAGRQ +PR N H RG +R RLP +L ++ S
Sbjct: 230 RAAGRQALPRSNSTGHERGGGGMERFALRLPEHVRLEILMS 270
>11_06_0152 +
20669949-20670326,20670887-20670997,20671079-20671280,
20671393-20671675,20672145-20672234,20672366-20672473,
20672595-20672975,20673250-20673324,20673685-20673797,
20676233-20676742,20676807-20677300
Length = 914
Score = 29.1 bits (62), Expect = 4.3
Identities = 24/68 (35%), Positives = 28/68 (41%)
Frame = +2
Query: 2 GPVRNRAAGRQGVPRGN*QDHARGRQAAQRRLPATEQLFVVRSLLPVLQDGGHAEEHHHV 181
G R AAG + VPRG ++ RGRQ R A S P A +
Sbjct: 677 GVFREEAAGDRAVPRGRVRE-GRGRQRRHRGFIALWASTAAPSPAPSAVGPTPAAAAAEL 735
Query: 182 LRHVAARG 205
LR VAA G
Sbjct: 736 LRRVAAPG 743
>01_06_0489 +
29754298-29754549,29754639-29754772,29755667-29755721,
29755888-29756007,29756048-29756140,29756360-29756474,
29756728-29757077,29757264-29757332,29757902-29758509,
29758577-29758646
Length = 621
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/47 (36%), Positives = 27/47 (57%)
Frame = -1
Query: 260 GVADDVPRDLVVGLRRGLHRVPRHVVERDDVLQHAHRLVERAEAIVR 120
G+ D+ R+LVVGL + ++ V ++D+LQ RL A +I R
Sbjct: 463 GLISDI-RNLVVGLSSRRGQRAKNKVLQEDILQEIERLAAEAYSIFR 508
>11_04_0037 -
12642141-12642239,12643352-12643618,12643682-12643750,
12643919-12644116,12644262-12644267
Length = 212
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 149 DGGHAEEHHHVLRHVAARGGVHGAVRQQGHVER 247
D + H V+ +A GG HGA R+QG R
Sbjct: 108 DEKQRQRQHKVVVGLAVAGGEHGAARKQGKQSR 140
>01_07_0369 -
43111835-43111882,43112172-43112245,43112670-43112754,
43112930-43113022,43113099-43113163,43114051-43114142,
43114240-43114527,43114642-43114706,43115421-43115502,
43115578-43115669,43116169-43116301,43116380-43116501,
43116624-43116725,43116853-43116892,43117032-43117103,
43117241-43117320,43117444-43117818
Length = 635
Score = 28.7 bits (61), Expect = 5.7
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +3
Query: 12 EIVQLVG--KASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITFY 185
+++ LVG KA+L D L L + F S+S P Y ++ L + F+
Sbjct: 308 KVISLVGAQKATLHPDDIFLLSNFILSSESFRTSESFSPI--CLPRYNSMAFLYAYVHFF 365
Query: 186 DMSRHAVESTAQSDNKVTWNVIRDAMGNVL 275
D + + TA+SD R + NVL
Sbjct: 366 DENTYLTLLTARSDAFYDLKDSRSRIQNVL 395
>11_02_0053 - 7797580-7798731
Length = 383
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = -1
Query: 290 GGELVEHVA--HGVADDVPRDLVVGLRRGLHRVPRHV 186
GG VEHV G+ DDV D + + G HR R V
Sbjct: 14 GGVAVEHVELIPGMPDDVAVDCLARVPHGAHRAMRRV 50
>07_03_0333 -
16888606-16888740,16889463-16889570,16889691-16889790,
16890473-16890560,16890637-16893253
Length = 1015
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 74 RQAAQRRLPATEQLFVVRSLLPVLQDGGHAEEHHHVLRHVAARG 205
R A + P T Q + +L L GHA + +LRH+ ARG
Sbjct: 140 RMAREGAPPPTNQAYA--ALADALAKAGHARDSLLLLRHMRARG 181
>06_01_0313 -
2250312-2250516,2250585-2250610,2250792-2251076,
2251289-2251567,2251817-2252121,2252581-2252860,
2253209-2253475
Length = 548
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/49 (26%), Positives = 24/49 (48%)
Frame = +3
Query: 168 NIITFYDMSRHAVESTAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVK 314
N++ + SRH + A S +K++ N + A+ V KF++ K
Sbjct: 41 NMVVILNDSRHTLLPKADSQSKMSINALSSALSKVQSSKGFRKFREAAK 89
>06_03_0501 +
21476715-21476785,21477045-21477786,21478097-21478246,
21478350-21478589,21479968-21480048,21480144-21480185,
21480953-21481033,21481271-21481368,21482574-21482667,
21482733-21482861,21483881-21483931,21484023-21484049,
21484280-21484387,21484956-21485201
Length = 719
Score = 27.9 bits (59), Expect = 9.9
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = +2
Query: 125 RSLLPVLQDGGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPRRHGQRALPALLHEV 298
R + ++ HA H H HV G HG H H HG P+ H V
Sbjct: 215 RDAMHIVGIHAHAAAHRHSHAHV--HGACHGGAVNDAHA--HGHGHGHEEGPSARHVV 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,794,914
Number of Sequences: 37544
Number of extensions: 373384
Number of successful extensions: 1176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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