Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0297
         (800 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                215   3e-56

>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score =  215 bits (526), Expect = 3e-56
 Identities = 97/130 (74%), Positives = 115/130 (88%)
 Frame = +3

Query: 3   DLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITF 182
           DLSEIVQLVGK SLAE+DKITLEVAKL+KDDFLQQN Y+ YD+FCPFYKTVGML NI+ F
Sbjct: 346 DLSEIVQLVGKGSLAESDKITLEVAKLIKDDFLQQNGYTPYDKFCPFYKTVGMLSNIVAF 405

Query: 183 YDMSRHAVESTAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLED 362
           YDM+RH+VE+TAQ++NKVTWNVI++ MG+ +Y LSSMKFKDP+KDGE KIKADF +L E 
Sbjct: 406 YDMARHSVETTAQAENKVTWNVIKENMGDAIYALSSMKFKDPIKDGEAKIKADFAELHEQ 465

Query: 363 MSAAFRNLED 392
           +   FR+LED
Sbjct: 466 LQQGFRSLED 475


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,250,897
Number of Sequences: 59808
Number of extensions: 442339
Number of successful extensions: 1293
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)