Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0297
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.3  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   3.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.8  
AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory...    22   7.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +2

Query: 143 LQDGGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPRRHGQRALPALLH 292
           L+D   A  H+++L +V +  G H      GH   H   H   +  A  H
Sbjct: 393 LEDNALAS-HNNLLNNVYSTPGPHHHTMGHGHSHIHATPHHHHSHAATPH 441


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 16/60 (26%), Positives = 28/60 (46%)
 Frame = +2

Query: 116 FVVRSLLPVLQDGGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPRRHGQRALPALLHE 295
           +   S +P L++GG   EH H  +H    G      +Q   V++  ++ G    P+LL +
Sbjct: 4   YFANSYIPDLRNGG--VEHPH--QHQQHYGAAVQVPQQTQSVQQQSQQAGDPCDPSLLRQ 59


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 257 VADDVPRDLVVGLRRGLHRVPRHVVERD 174
           ++D + RDL  G+R GL  + R  +  D
Sbjct: 678 ISDRLSRDLYCGIRAGLSWLERIQIALD 705


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 257 VADDVPRDLVVGLRRGLHRVPRHVVERD 174
           ++D + RDL  G+R GL  + R  +  D
Sbjct: 716 ISDRLSRDLYCGIRAGLSWLERIQIALD 743


>AJ555537-1|CAD88245.1|  210|Apis mellifera putative chemosensory
           receptor 2 protein.
          Length = 210

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 164 EEHHHVLRHVAARGGVHG 217
           E H H++R V A G  +G
Sbjct: 108 ERHKHIVRLVTAIGDAYG 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,492
Number of Sequences: 438
Number of extensions: 4404
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)