Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0297
         (800 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit...   146   1e-35
At1g16820.1 68414.m02021 vacuolar ATP synthase catalytic subunit...    42   5e-04
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse...    34   0.13 
At4g28190.1 68417.m04041 expressed protein                             32   0.51 
At2g20825.1 68415.m02452 expressed protein                             32   0.51 
At1g48405.1 68414.m05407 hypothetical protein                          31   1.2  
At1g16610.2 68414.m01990 arginine/serine-rich protein, putative ...    29   4.7  
At1g16610.1 68414.m01989 arginine/serine-rich protein, putative ...    29   4.7  
At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transfera...    28   8.3  

>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
           / V-ATPase A subunit / vacuolar proton pump alpha
           subunit / V-ATPase 69 kDa subunit identical to SP|O23654
           Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
           (V-ATPase A subunit) (Vacuolar proton pump alpha
           subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
           thaliana}
          Length = 623

 Score =  146 bits (355), Expect = 1e-35
 Identities = 70/133 (52%), Positives = 100/133 (75%), Gaps = 1/133 (0%)
 Frame = +3

Query: 3   DLSEIVQLVGKASLAETDKITLEVAKLLKDDFLQQNSYSSYDRFCPFYKTVGMLKNIITF 182
           DL+EIVQLVGK +LAE DKITLE AKLL++D+L QN+++ YD+FCPFYK+V M++NII F
Sbjct: 491 DLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHF 550

Query: 183 YDMSRHAVESTAQSD-NKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLE 359
           Y+++  AVE  A  D  K+T+ +I+  +G++ Y+L S KF+DP  +GE  +   F +L +
Sbjct: 551 YNLANQAVERAAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPA-EGEDTLVEKFKKLYD 609

Query: 360 DMSAAFRNLED*T 398
           D++A FR LED T
Sbjct: 610 DLNAGFRALEDET 622


>At1g16820.1 68414.m02021 vacuolar ATP synthase catalytic
           subunit-related / V-ATPase-related / vacuolar proton
           pump-related similar to Vacuolar ATP synthase catalytic
           subunit A (V-ATPase A subunit) (Vacuolar proton pump
           alpha subunit) (V-ATPase 69 kDa subunit) (SP:O23654)
           [Arabidopsis thaliana]
          Length = 93

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 16/37 (43%), Positives = 27/37 (72%)
 Frame = +3

Query: 117 SSYDRFCPFYKTVGMLKNIITFYDMSRHAVESTAQSD 227
           ++YD+F P YK+V M++NII FY+++  A++  A  D
Sbjct: 32  TNYDKFSPSYKSVWMMRNIIHFYNLANQAIDRAAGVD 68


>At1g67870.1 68414.m07750 glycine-rich protein contains
           non-consensus GG donor splice site at exon2; modeled to
           est match.
          Length = 279

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = +2

Query: 152 GGHAEEHH--HVLRHVAARG----GVHGAVRQQGHVERHPRRHGQR 271
           GGH  +HH  H ++H    G    G+HG   Q GH  +H   HG +
Sbjct: 132 GGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQ 177



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 152 GGHAEEHH--HVLRHVAARG----GVHGAVRQQGHVERHPRRHGQR 271
           GGH  EH   H ++H    G    G HG   Q GH  +H   HG +
Sbjct: 188 GGHGMEHQGGHGMQHQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQ 233



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
 Frame = +2

Query: 152 GGHAEEHH--HVLRHVAARG----GVHGAVRQQGHVERHPRRHGQR 271
           GGH  +H   H ++H    G    G HG   Q GH  +H   HG +
Sbjct: 164 GGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQDMHGMQ 209



 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 152 GGHAEEHHHVLRHVAARGGVHGAVRQQGHVERHPRRHGQR 271
           GGH  +H  +  H     G HG   Q GH  +H   HG +
Sbjct: 148 GGHGMQHQGM--HGMQHQGGHGMQHQGGHGMQHQGMHGMQ 185


>At4g28190.1 68417.m04041 expressed protein
          Length = 237

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  SCSWSARRPSRKLTRSRSRSPSCSKTTSC 102
           +C     R SRK+ R  +RSPSC   TSC
Sbjct: 182 TCEEEEERGSRKVYRGCTRSPSCKGCTSC 210


>At2g20825.1 68415.m02452 expressed protein
          Length = 228

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 16  SCSWSARRPSRKLTRSRSRSPSCSKTTSC 102
           +C     R SRK+ R  +RSPSC   TSC
Sbjct: 172 TCEEEEERGSRKVFRGCTRSPSCKGCTSC 200


>At1g48405.1 68414.m05407 hypothetical protein
          Length = 297

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 147 KTVGMLKNIITFYDMSRH-AVESTAQSDNKVT 239
           KT+G+LK ++   DM +  AVE TA   +K+T
Sbjct: 145 KTIGLLKKLVMLLDMEKEVAVEETANLGHKLT 176


>At1g16610.2 68414.m01990 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 407

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 16  SCSWSARRPSRKLTRSRSRSPSCSKTTS 99
           S S S   PSR ++RSRSRS S S ++S
Sbjct: 22  SRSRSGSSPSRSISRSRSRSRSLSSSSS 49


>At1g16610.1 68414.m01989 arginine/serine-rich protein, putative
           (SR45) similar to arginine/serine-rich protein
           GI:6601502 from [Arabidopsis thaliana]
          Length = 414

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 16  SCSWSARRPSRKLTRSRSRSPSCSKTTS 99
           S S S   PSR ++RSRSRS S S ++S
Sbjct: 22  SRSRSGSSPSRSISRSRSRSRSLSSSSS 49


>At3g21790.1 68416.m02748 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 495

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/53 (28%), Positives = 34/53 (64%)
 Frame = +3

Query: 213 TAQSDNKVTWNVIRDAMGNVLYQLSSMKFKDPVKDGEPKIKADFDQLLEDMSA 371
           +A S+N++ + VI  A+     ++++++    +K+ EPK+++   +LLED S+
Sbjct: 58  SASSNNRLRYEVI-SAVDQPTIEMTTIEIH--MKNQEPKVRSTVAKLLEDYSS 107


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,089,582
Number of Sequences: 28952
Number of extensions: 292047
Number of successful extensions: 823
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1814318400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)