Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0296
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    26   1.1  
CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein ...    25   2.5  
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    23   7.6  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 389  LPADSGCGSPGNCSRHSLSVQY 324
            LP D+  G PGNC   ++ + Y
Sbjct: 1822 LPPDNDKGYPGNCGSSTIGITY 1843


>CR954256-5|CAJ14146.1|  615|Anopheles gambiae predicted protein
           protein.
          Length = 615

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 1/91 (1%)
 Frame = +3

Query: 312 SRPIVLHGKRMPRAITRASAAGVGWQQLHHDVRDDGICVSYVYDAPATQPDPRCGQTSAQ 491
           +R I L  K +    TRA+AA V   Q H + +   +  +  +     +  P     + +
Sbjct: 264 ARIITLTPKNVGSEATRATAAAVASDQAHREAQLRLLADTKKFTRFLVEAPPVASVEAVK 323

Query: 492 SSRPXRCSPYTFXNLINTCRXDLFIPXG-RC 581
            +   +  P ++  L   C   L +  G RC
Sbjct: 324 FTHIFQILPPSYDRLCQQCHKALHLDIGLRC 354


>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
            gambiae RT2 retroposon. ).
          Length = 1222

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 451  RRNQIQDAAKPAHNPHDRXGAPPTP 525
            RRN  + AA        R G PPTP
Sbjct: 1110 RRNANRRAATARRREERRAGLPPTP 1134


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,916
Number of Sequences: 2352
Number of extensions: 12188
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)