Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0296
         (750 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY113320-1|AAM29325.1|  110|Drosophila melanogaster AT28250p pro...    54   2e-07
AE013599-3894|AAM68318.1|  110|Drosophila melanogaster CG13585-P...    54   2e-07
AE013599-3893|AAF47223.1|  110|Drosophila melanogaster CG13585-P...    54   2e-07

>AY113320-1|AAM29325.1|  110|Drosophila melanogaster AT28250p
           protein.
          Length = 110

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +1

Query: 235 MGDEMDPCECLWNHELAMRRLISLLRQGQSYCTESECLEQLPGLP-QPESAG 387
           M D+ D CEC+W+ E AM+RLI+ +RQ Q+ C ++EC +     P Q + AG
Sbjct: 1   MSDDFDGCECVWSQEYAMQRLINFIRQNQNACGDNECYDVTGRTPHQAQIAG 52


>AE013599-3894|AAM68318.1|  110|Drosophila melanogaster CG13585-PB,
           isoform B protein.
          Length = 110

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +1

Query: 235 MGDEMDPCECLWNHELAMRRLISLLRQGQSYCTESECLEQLPGLP-QPESAG 387
           M D+ D CEC+W+ E AM+RLI+ +RQ Q+ C ++EC +     P Q + AG
Sbjct: 1   MSDDFDGCECVWSQEYAMQRLINFIRQNQNACGDNECYDVTGRTPHQAQIAG 52


>AE013599-3893|AAF47223.1|  110|Drosophila melanogaster CG13585-PA,
           isoform A protein.
          Length = 110

 Score = 54.0 bits (124), Expect = 2e-07
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
 Frame = +1

Query: 235 MGDEMDPCECLWNHELAMRRLISLLRQGQSYCTESECLEQLPGLP-QPESAG 387
           M D+ D CEC+W+ E AM+RLI+ +RQ Q+ C ++EC +     P Q + AG
Sbjct: 1   MSDDFDGCECVWSQEYAMQRLINFIRQNQNACGDNECYDVTGRTPHQAQIAG 52


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,877,849
Number of Sequences: 53049
Number of extensions: 511125
Number of successful extensions: 1274
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1274
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)