Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0295
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.6  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    25   8.7  

>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = -3

Query: 610 HYLLFTVTWIVLFLGV*LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLG---GVVRW 443
           +Y+  T++WI+ F+G+ LG  V G     +   L W        I+   +G   GVV W
Sbjct: 417 NYIGITISWIITFIGIALGPAVFG-----ITLTLFWKKMNKYGMIIGCPMGSITGVVCW 470


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 211 FAISSSVRVPALFHQACLFCIGIREVAFLAYVCSIGDLILVFVTA 77
           F ISSS+R P + H   L   G  +   +  +CS GDL  + + A
Sbjct: 406 FCISSSLRHPNVIHTLDLIQDGKGDYCEVMELCSGGDLYTLIMAA 450


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 65  YGDNGSYKYEYQIADGTHVGEEGYFTNP 148
           YG + SY YE  I + T+  +  Y  +P
Sbjct: 281 YGPSNSYGYEININESTNHVDSSYLPHP 308


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,756
Number of Sequences: 5004
Number of extensions: 53682
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)