BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brP-0295 (750 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887 30 1.7 11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475 29 3.9 02_05_1039 + 33707196-33708815 29 3.9 01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 28 6.9 07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 28 9.1 03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 28 9.1 02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059... 28 9.1 >04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887 Length = 253 Score = 30.3 bits (65), Expect = 1.7 Identities = 13/31 (41%), Positives = 21/31 (67%) Frame = +2 Query: 212 VYTVHYWADKTGYHAYGDHLPTPPPVPAAIQ 304 V+ +Y A+ T Y+A G + P PPP+PA ++ Sbjct: 196 VHLPYYAANATPYYA-GGYYPIPPPMPAMLR 225 >11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475 Length = 634 Score = 29.1 bits (62), Expect = 3.9 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -2 Query: 509 ELGSKKELEWDSKLELGWGSKMGLGW 432 + KK LEW +L++ GS GL W Sbjct: 411 QTSEKKALEWPLRLKIAIGSAKGLAW 436 >02_05_1039 + 33707196-33708815 Length = 539 Score = 29.1 bits (62), Expect = 3.9 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%) Frame = +2 Query: 89 YEYQIADGTHVGEEGYFTNPNT---EEASLVKKGWYSYTGADGKVYTVHYWADKTGY--- 250 Y +Q A + G+ ++ N E K+ + + +D V W D+ G+ Sbjct: 351 YFHQNACKVFEQDMGFLSSQNEVLLREKVPTKELYLNLRSSDTWVAEYRRWMDRAGHGMP 410 Query: 251 HAYGDHLPTPPPVPAAIQAA 310 + +G +PPPVPA ++ A Sbjct: 411 YYFGHSTLSPPPVPAVVEQA 430 >01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055 Length = 963 Score = 28.3 bits (60), Expect = 6.9 Identities = 22/63 (34%), Positives = 25/63 (39%) Frame = +2 Query: 113 THVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPPVP 292 T VG+ TNP + LV K S A K A + G G PTPPP P Sbjct: 489 TQVGDTVEATNPLRADKDLVAKKAKSPVNAAEKTEAGKSAAGE-GVRTTGSSNPTPPPSP 547 Query: 293 AAI 301 I Sbjct: 548 PFI 550 >07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467 Length = 945 Score = 27.9 bits (59), Expect = 9.1 Identities = 22/63 (34%), Positives = 25/63 (39%) Frame = +2 Query: 113 THVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPPVP 292 T VG+ TNP + LV K + A K AD G G PTPPP P Sbjct: 489 TQVGDTVETTNPLRADRDLVAKKAKTPVSAAEKSEAGKSAADG-GVRTTGSSNPTPPPSP 547 Query: 293 AAI 301 I Sbjct: 548 PFI 550 >03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595, 3649641-3649697,3649743-3650993 Length = 512 Score = 27.9 bits (59), Expect = 9.1 Identities = 11/44 (25%), Positives = 23/44 (52%) Frame = -2 Query: 290 VREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQCKSTSPFSPGLP 159 V ++V G + +P+ + + H+ +C++ +P PGLP Sbjct: 114 VSARKFVPGAKLCMQPDIKPNKRKSRSSHKERCRTQAPLLPGLP 157 >02_05_0740 - 31404004-31404180,31404365-31405261,31405351-31405978, 31405997-31406468,31406575-31407052 Length = 883 Score = 27.9 bits (59), Expect = 9.1 Identities = 22/63 (34%), Positives = 25/63 (39%) Frame = +2 Query: 113 THVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPPVP 292 T VG+ TNP + LV K + A K AD G G PTPPP P Sbjct: 370 TQVGDTVETTNPLRADRDLVAKKAKTPVNAAEKSEAGKSAADG-GVRTTGSSNPTPPPSP 428 Query: 293 AAI 301 I Sbjct: 429 PFI 431 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,678,990 Number of Sequences: 37544 Number of extensions: 391622 Number of successful extensions: 1355 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 1281 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1351 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1992480932 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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