Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0295
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887     30   1.7  
11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475           29   3.9  
02_05_1039 + 33707196-33708815                                         29   3.9  
01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055     28   6.9  
07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467           28   9.1  
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364...    28   9.1  
02_05_0740 - 31404004-31404180,31404365-31405261,31405351-314059...    28   9.1  

>04_04_1148 + 31264847-31264870,31264987-31265062,31265226-31265887
          Length = 253

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +2

Query: 212 VYTVHYWADKTGYHAYGDHLPTPPPVPAAIQ 304
           V+  +Y A+ T Y+A G + P PPP+PA ++
Sbjct: 196 VHLPYYAANATPYYA-GGYYPIPPPMPAMLR 225


>11_02_0072 + 8015915-8015934,8016064-8016946,8017474-8018475
          Length = 634

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 509 ELGSKKELEWDSKLELGWGSKMGLGW 432
           +   KK LEW  +L++  GS  GL W
Sbjct: 411 QTSEKKALEWPLRLKIAIGSAKGLAW 436


>02_05_1039 + 33707196-33708815
          Length = 539

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
 Frame = +2

Query: 89  YEYQIADGTHVGEEGYFTNPNT---EEASLVKKGWYSYTGADGKVYTVHYWADKTGY--- 250
           Y +Q A      + G+ ++ N     E    K+ + +   +D  V     W D+ G+   
Sbjct: 351 YFHQNACKVFEQDMGFLSSQNEVLLREKVPTKELYLNLRSSDTWVAEYRRWMDRAGHGMP 410

Query: 251 HAYGDHLPTPPPVPAAIQAA 310
           + +G    +PPPVPA ++ A
Sbjct: 411 YYFGHSTLSPPPVPAVVEQA 430


>01_06_1575 + 38339970-38340786,38340884-38342001,38342099-38343055
          Length = 963

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 22/63 (34%), Positives = 25/63 (39%)
 Frame = +2

Query: 113 THVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPPVP 292
           T VG+    TNP   +  LV K   S   A  K       A + G    G   PTPPP P
Sbjct: 489 TQVGDTVEATNPLRADKDLVAKKAKSPVNAAEKTEAGKSAAGE-GVRTTGSSNPTPPPSP 547

Query: 293 AAI 301
             I
Sbjct: 548 PFI 550


>07_01_0805 + 6295448-6296264,6296362-6297479,6297565-6298467
          Length = 945

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/63 (34%), Positives = 25/63 (39%)
 Frame = +2

Query: 113 THVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPPVP 292
           T VG+    TNP   +  LV K   +   A  K       AD  G    G   PTPPP P
Sbjct: 489 TQVGDTVETTNPLRADRDLVAKKAKTPVSAAEKSEAGKSAADG-GVRTTGSSNPTPPPSP 547

Query: 293 AAI 301
             I
Sbjct: 548 PFI 550


>03_01_0474 +
           3646724-3646789,3648952-3649067,3649547-3649595,
           3649641-3649697,3649743-3650993
          Length = 512

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = -2

Query: 290 VREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQCKSTSPFSPGLP 159
           V   ++V G +       +P+  + +  H+ +C++ +P  PGLP
Sbjct: 114 VSARKFVPGAKLCMQPDIKPNKRKSRSSHKERCRTQAPLLPGLP 157


>02_05_0740 -
           31404004-31404180,31404365-31405261,31405351-31405978,
           31405997-31406468,31406575-31407052
          Length = 883

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 22/63 (34%), Positives = 25/63 (39%)
 Frame = +2

Query: 113 THVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYHAYGDHLPTPPPVP 292
           T VG+    TNP   +  LV K   +   A  K       AD  G    G   PTPPP P
Sbjct: 370 TQVGDTVETTNPLRADRDLVAKKAKTPVNAAEKSEAGKSAADG-GVRTTGSSNPTPPPSP 428

Query: 293 AAI 301
             I
Sbjct: 429 PFI 431


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,678,990
Number of Sequences: 37544
Number of extensions: 391622
Number of successful extensions: 1355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)