Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-0295
(750 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4) 35 0.061
SB_48395| Best HMM Match : MAM (HMM E-Value=0) 33 0.25
SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09) 32 0.57
SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.57
SB_57398| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.76
SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085) 30 1.7
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21) 28 9.3
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11) 28 9.3
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 28 9.3
>SB_5940| Best HMM Match : Antimicrobial_3 (HMM E-Value=2.4)
Length = 409
Score = 35.1 bits (77), Expect = 0.061
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = -3
Query: 550 IVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGMINV 371
++T S V+ R + V+ RS +G+++ S GV+ G++ R V++R L ++V
Sbjct: 136 VITRSRNGVITRSRNGVITRSRNGVITRSRNGVITRSRNGVITRSRNGVISRSLSLHVHV 195
>SB_48395| Best HMM Match : MAM (HMM E-Value=0)
Length = 901
Score = 33.1 bits (72), Expect = 0.25
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -2
Query: 362 CSFRLQPARLPLWHFDQG-LPE*QQVREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQCKS 186
C F L LW D+ P V W + GS + P SGR + + ++
Sbjct: 301 CDFGTSAPTLCLWRNDKNNTPTNDGVYNFNWFSHNGPTGSANTGPPSGRGGSGYYIYLET 360
Query: 185 TSPFSPGL 162
+SPF PG+
Sbjct: 361 SSPFQPGM 368
>SB_47995| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-09)
Length = 745
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNR 395
+G V S+GR VGR + V RS+ V S+G V +G V R +GR V R
Sbjct: 267 VGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGR 321
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNR 395
+G V S+GR VGR + V RS+ V S+G V +G V R +GR V R
Sbjct: 271 VGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGR 325
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNR 395
+G V S+GR VGR + V RS+ V S+G V +G V R +GR V R
Sbjct: 275 VGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGR 329
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNR 395
+G V S+GR VGR + V RS+ V S+G V +G V R +GR V R
Sbjct: 279 VGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGR 333
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNR 395
+G V S+GR VGR + V RS+ V S+G V +G V R +GR V R
Sbjct: 283 VGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGR 337
Score = 31.5 bits (68), Expect = 0.76
Identities = 21/55 (38%), Positives = 29/55 (52%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNR 395
+G + S+GR VGR + V RS+ V S+G V +G V R +GR V R
Sbjct: 259 VGDLSNRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGRSVGR 313
>SB_47300| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 31.9 bits (69), Expect = 0.57
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = -3
Query: 523 VGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 380
V + V + + G+ +GGV +GG+ +C+G V +R+ G+
Sbjct: 42 VAERIGGVYEKRIGGVYEKHIGGVYEKRIGGVYEKCIGGVYEKRIGGV 89
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 380
+G + +G V + + V + + G+ +GGV +GG+ + +G V +R+ G+
Sbjct: 78 IGGVYEKRIGGVYEKRIGGVYEKRIEGVYEKRIGGVYEKRIGGVYEKRIGGVYEKRIGGV 137
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 380
+G + +G V + + V + + G+ +GGV +GG+ + +G V +R+ G+
Sbjct: 86 IGGVYEKRIGGVYEKRIEGVYEKRIGGVYEKRIGGVYEKRIGGVYEKRIGGVYEKRIGGV 145
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 380
+G + +G V + + V + + G+ +GGV +GG+ + +G V +R+ G+
Sbjct: 110 IGGVYEKRIGGVYEKRIGGVYEKRIGGVYEKRIGGVYEKRIGGVYEKRIGGVYQKRIGGV 169
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/60 (23%), Positives = 30/60 (50%)
Frame = -3
Query: 559 LGWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 380
+G + +G V + + V + + G+ +GGV +GG+ + +G V +R+ G+
Sbjct: 46 IGGVYEKRIGGVYEKHIGGVYEKRIGGVYEKCIGGVYEKRIGGVYEKRIGGVYEKRIEGV 105
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = -3
Query: 547 VTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRLCGM 380
V +G V + + V + + G+ +GGV +GG+ + +G V +R+ G+
Sbjct: 42 VAERIGGVYEKRIGGVYEKHIGGVYEKRIGGVYEKCIGGVYEKRIGGVYEKRIGGV 97
>SB_57398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 664
Score = 31.5 bits (68), Expect = 0.76
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLGRVVNRRL 389
GW +TG G V G L+ V L+GI W L GV W L G+ L V L
Sbjct: 118 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGICGWYLTGVCGWYLTGVCGSYLTGVCGSYL 177
Query: 388 CGM 380
G+
Sbjct: 178 TGV 180
Score = 31.1 bits (67), Expect = 1.00
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L G+ W L G+
Sbjct: 150 GWYLTGVCGWYLTGVCGSYLTGVCGSYLTGVCGWYLPGICGWYLTGV 196
Score = 31.1 bits (67), Expect = 1.00
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLGR----VVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L GI W L GV W L GI
Sbjct: 158 GWYLTGVCGSYLTGVCGSYLTGVCGWYLPGICGWYLTGVCGWYLTGI 204
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/49 (38%), Positives = 22/49 (44%)
Frame = -3
Query: 556 GWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIVCRCLG 410
GW +TG G + W L+GI W L GV W L GI LG
Sbjct: 198 GWYLTGICGWYLTGVCGWY----LTGICGWYLTGVCGWYLTGICGWYLG 242
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L GI
Sbjct: 102 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGI 148
Score = 30.3 bits (65), Expect = 1.7
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGIV-CRCLGRVVNRR 392
GW +TG G V G L+ + L+G+ W L V W L G+ C L VV
Sbjct: 467 GWYLTGICGWYLTGVCGWYLTGICGWYLTGVCGWYLTDVCGWYLTGVCGCTLLASVVGTL 526
Query: 391 LCGMINVL 368
L + + L
Sbjct: 527 LASVGSTL 534
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 14 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 60
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 22 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 68
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 30 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 76
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 38 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 84
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 46 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 92
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 54 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 100
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 62 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 108
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 70 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 116
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 78 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 124
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Frame = -3
Query: 556 GWIVTGSLG----RVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G V G L+ V L+G+ W L GV W L G+
Sbjct: 86 GWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGVCGWYLTGV 132
Score = 28.7 bits (61), Expect = 5.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 556 GWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW +TG G + W L+G+ W L G+ W L G+
Sbjct: 190 GWYLTGVCGWYLTGICGWY----LTGVCGWYLTGICGWYLTGV 228
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -3
Query: 556 GWIVTGSLGRVVGRGLSWVVRRSLSGIVSWSLGGVVRWGLGGI 428
GW + G G + W L+GI W L GV W L GI
Sbjct: 182 GWYLPGICGWYLTGVCGWY----LTGICGWYLTGVCGWYLTGI 220
>SB_36388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1570
Score = 31.1 bits (67), Expect = 1.00
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -2
Query: 290 VREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQC--KSTSP 177
+ EE+W +K + C CK CH+++C K T P
Sbjct: 131 ILEEKWEKEKKKFKCKCCGRVDCTCKKCHKIECEQKETEP 170
>SB_27204| Best HMM Match : RVT_1 (HMM E-Value=0.00085)
Length = 646
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -3
Query: 652 FSLVSRKICIRSFKHYLL--FTVTWIVLFLGV*LG 554
F VS KI R K Y + + + WIV FLG LG
Sbjct: 494 FDSVSHKILCRKLKSYDINPYVINWIVSFLGTVLG 528
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 62 YYGDNGSYKYEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVY-TVHYWAD 238
YY + G+ Y G G++G P E + +Y+Y GAD + Y + + +
Sbjct: 1086 YYDEQGNIVEGYDA--GQVYGQDGQLLAPAVEATEAYGEEYYTYEGADQQAYPSEQVYVE 1143
Query: 239 KTGYHAYGD 265
G Y D
Sbjct: 1144 GQGEAQYAD 1152
>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 975
Score = 29.1 bits (62), Expect = 4.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 110 HRRFDTRICNCHYHHNTFHS 51
HR F CNCHY +N +S
Sbjct: 753 HRHFSLSRCNCHYENNNNNS 772
>SB_53703| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 80 SYKYEYQIADGTHVGEEGYFTNPNTE 157
S ++E +I DG G++G F + NTE
Sbjct: 43 STQWEVKIQDGARTGQKGIFRDDNTE 68
>SB_21284| Best HMM Match : F5_F8_type_C (HMM E-Value=1.8e-21)
Length = 564
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 184 PALFHQACLFCIGIREVAFLAYVCSIGDLILVFVTAIITIIHFIL 50
PA L C+ I + + + I +I++F+T I+ II I+
Sbjct: 316 PATSDAQLLLCLHIYIITIIITIIIIITIIIIFITTILIIITIII 360
>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
Length = 900
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 263 PRKHGSQSCRPSSGRCKLCHQLQCKSTS 180
P + G+ S G C++C+ +QC S S
Sbjct: 396 PARGGADCVGSSRGHCRVCNSVQCPSGS 423
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 89 YEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGA 202
Y + +A G+ +G T P+T+ + GWY+YT A
Sbjct: 3913 YAWVVAQGS-TSTQG--TGPSTDHTTGTANGWYAYTDA 3947
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,146,165
Number of Sequences: 59808
Number of extensions: 436281
Number of successful extensions: 1417
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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