Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0295
         (750 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK172839-1|BAD18804.1|  473|Homo sapiens protein ( Homo sapiens ...    31   3.3  
AK130508-1|BAC85367.1|  121|Homo sapiens protein ( Homo sapiens ...    31   5.8  

>AK172839-1|BAD18804.1|  473|Homo sapiens protein ( Homo sapiens
           cDNA FLJ24000 fis, clone KAIA1329, highly similar to
           Homo sapiens cAMP responsive element binding protein
           3-like 3 ).
          Length = 473

 Score = 31.5 bits (68), Expect = 3.3
 Identities = 20/64 (31%), Positives = 29/64 (45%)
 Frame = -2

Query: 350 LQPARLPLWHFDQGLPE*QQVREEEWVNGPRKHGSQSCRPSSGRCKLCHQLQCKSTSPFS 171
           L  A L L +  +GL    QV   +WV    +H  ++CR   G  + C   Q  +  P  
Sbjct: 376 LDNATLVLRNATEGLG---QVAPLDWVAPGPEHWLRTCRAGGGGRRACEPRQDYAPRPLC 432

Query: 170 PGLP 159
           PG+P
Sbjct: 433 PGVP 436


>AK130508-1|BAC85367.1|  121|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26998 fis, clone SLV04689. ).
          Length = 121

 Score = 30.7 bits (66), Expect = 5.8
 Identities = 27/81 (33%), Positives = 32/81 (39%)
 Frame = -2

Query: 413 GSGSK*APVWDDKRVVACSFRLQPARLPLWHFDQGLPE*QQVREEEWVNGPRKHGSQSCR 234
           GSG++  P W       C FRL P   P     QG    +   EEE    P  HG  S  
Sbjct: 41  GSGARAQPSW-----FLC-FRLSPGCCPGGR--QGCGLIRGSTEEECFQAPSGHGQNSFP 92

Query: 233 PSSGRCKLCHQLQCKSTSPFS 171
            S G    C  +  +S  PFS
Sbjct: 93  CSCGTWVACSSMPHRSLLPFS 113


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,836,350
Number of Sequences: 237096
Number of extensions: 2192221
Number of successful extensions: 6268
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6260
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9015132854
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)