Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0295
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    28   8.1  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    28   8.1  

>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 248  SQSCRPSSGRCKLCHQ 201
            S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 248  SQSCRPSSGRCKLCHQ 201
            S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 248  SQSCRPSSGRCKLCHQ 201
            S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 248  SQSCRPSSGRCKLCHQ 201
            S+SC P+SG C LC Q
Sbjct: 1948 SRSCHPNSGDCYLCEQ 1963


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,805,081
Number of Sequences: 27780
Number of extensions: 308407
Number of successful extensions: 784
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)