Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0295
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    58   7e-11
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 58.4 bits (135), Expect = 7e-11
 Identities = 28/81 (34%), Positives = 45/81 (55%)
 Frame = +2

Query: 74  NGSYKYEYQIADGTHVGEEGYFTNPNTEEASLVKKGWYSYTGADGKVYTVHYWADKTGYH 253
           +G+Y   ++ ++G    E G     + E   +V +G  SYT  DG+  ++ Y AD+ G+ 
Sbjct: 39  DGNYINNFETSNGISHQESGQPKQVDNE-TPVVSQGSDSYTAPDGQQVSITYVADENGFQ 97

Query: 254 AYGDHLPTPPPVPAAIQAALD 316
             G H+PT PP+P  IQ AL+
Sbjct: 98  VQGSHIPTAPPIPPEIQRALE 118


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/32 (34%), Positives = 14/32 (43%)
 Frame = +2

Query: 50  KNEMYYGDNGSYKYEYQIADGTHVGEEGYFTN 145
           KNE   G   +YK E  + D   V + G   N
Sbjct: 112 KNENCSGITSAYKIEIDMCDRLWVLDSGLINN 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,229
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)