Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0295
         (750 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g33080.2 68414.m04081 MATE efflux family protein similar to r...    32   0.47 
At1g47210.2 68414.m05226 cyclin family protein similar to A-type...    31   0.62 
At4g14230.1 68417.m02196 CBS domain-containing protein-related c...    29   4.4  
At1g21670.1 68414.m02712 expressed protein similar to TolB prote...    29   4.4  
At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    28   5.8  
At1g67140.1 68414.m07638 expressed protein                             28   5.8  
At1g22080.1 68414.m02761 hypothetical protein                          28   5.8  

>At1g33080.2 68414.m04081 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile PF01554:
           Uncharacterized membrane protein family
          Length = 490

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
 Frame = -3

Query: 268 MVPVSMVASLVGPVVDGVNFAISSSVRVPALFHQACLFCIGIREVAFLAYVCS------- 110
           ++  S++ + + PV+ GV         V  + + AC + +GI    FL YV         
Sbjct: 384 LLAFSILLNSIQPVLSGVAVGAGWQKYVTVV-NLACYYLVGIPSGLFLGYVVGLQVKGVW 442

Query: 109 IGDLILVFV-TAIITIIHFILDHWDGSCCSRSLI 11
           +G +  +FV T ++T++    D WD   C  ++I
Sbjct: 443 LGMIFGIFVQTCVLTVMTMRTD-WDQQVCKSNII 475


>At1g47210.2 68414.m05226 cyclin family protein similar to A-type
           cyclin [Catharanthus roseus] GI:2190259; contains Pfam
           profile PF00134: Cyclin, N-terminal domain
          Length = 372

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 206 HQLQCKSTSPFSPGLPLLYWD 144
           H+ QC +T P SP LP+ +W+
Sbjct: 348 HKFQCVATMPVSPELPVTFWE 368


>At4g14230.1 68417.m02196 CBS domain-containing protein-related
           contains Pfam profile PF01595: Domain of unknown
           function
          Length = 495

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -3

Query: 604 LLFTVTWIVLFLGV*LGWIVTGSLGRVVGRGLSWVVR--RSLSGIVSWSLGGVVRWGLG 434
           ++ +VT+ VLF+G  +   +    G  VG  L W+VR    LS  +S+ +  ++ W LG
Sbjct: 123 IILSVTF-VLFVGEVIPQAICTRYGLAVGANLVWLVRILMVLSYPISFPIAKMLDWVLG 180


>At1g21670.1 68414.m02712 expressed protein similar to TolB protein
           precursor (SP:P50601) {Pseudomonas aeruginosa}
          Length = 703

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 92  EYQIADGTHVGEEGYFTNPNTEEASLVKK 178
           E+++ DG  +   GYF +P+T   SL+ K
Sbjct: 63  EHRLTDGKSINFNGYFASPSTALISLLPK 91


>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 128 EGYFTNPNTEEASLVKKGWYSYTGADGKVYTVH 226
           +GY+ NP+T +  L + GW++ TG  G +   H
Sbjct: 555 KGYYKNPSTTKQVLNESGWFN-TGDTGWIAPHH 586


>At1g67140.1 68414.m07638 expressed protein
          Length = 2158

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 247  ASLVGPVVDGVNFAISSSVRVPALFHQACLFCIG 146
            AS   P  DG NFA  S   + A+F  ACL  +G
Sbjct: 1627 ASSQKPYTDGTNFAADSGFHLRAIF-GACLHMVG 1659


>At1g22080.1 68414.m02761 hypothetical protein
          Length = 475

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +3

Query: 90  TSIKSPMEHT*ARKATSRIPIQKRQAW*KRAGTLTLELMAKFTP 221
           + + S MEH+ AR + +++P      W +   T+   L+A+  P
Sbjct: 408 SDVASKMEHSDARYSVTKVPTSMDTLWAQVIATMPYHLVAQAVP 451


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,177,764
Number of Sequences: 28952
Number of extensions: 300954
Number of successful extensions: 795
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 795
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)