Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0294
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces ...    35   0.011
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    32   0.076
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.94 
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    28   1.6  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    28   1.6  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    27   2.2  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.0  
SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr ...    26   5.0  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    26   6.6  
SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    26   6.6  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    25   8.7  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    25   8.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.7  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   8.7  
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb...    25   8.7  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        25   8.7  

>SPBC649.04 |uvi15||UV-induced protein Uvi15|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 87

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 237 PIQPINTYPQNNYAPPQNSYYPQNTYAPPQ 326
           P  P   Y   NY PPQ + YPQ  YAPPQ
Sbjct: 14  PAPPQQAYGGPNYYPPQQN-YPQQGYAPPQ 42



 Score = 34.3 bits (75), Expect = 0.019
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = +3

Query: 207 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 335
           PQ  +  P     P   YPQ  YAPPQ   YPQ  Y   Q  Y
Sbjct: 17  PQQAYGGP-NYYPPQQNYPQQGYAPPQG--YPQGGYPAQQPMY 56


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 32.3 bits (70), Expect = 0.076
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +3

Query: 219 WNAPPKPIQPINTYPQN-NYAPPQNSYYP-QNTYAPP 323
           + A P+P  P   YPQ   Y P Q +YYP Q  YA P
Sbjct: 96  YGAAPQPYPPQGGYPQQPYYYPNQPNYYPAQPAYAQP 132


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 189  PPIQWKPQNTWNAPPKPIQPINTYPQNN 272
            P  Q    +  +APP P+QP+N  P +N
Sbjct: 1365 PKPQIPDSSNVHAPPPPVQPMNAMPSHN 1392


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 17/69 (24%), Positives = 33/69 (47%)
 Frame = +2

Query: 185 EPAYPVETSKYVERSTQADPADKHLSPKQLRPPSKLILSSEYICSSSKHISSHLEHAFIS 364
           EP+ P+E     ER+   +P++   S  + R   K   +S  +   ++H+S+       +
Sbjct: 666 EPSNPIE-----ERNEDIEPSEASTSVSKKRKQKKKKKNSGKLTIEAEHVSNDSPIINEA 720

Query: 365 DFDYNNSRS 391
            FDY N ++
Sbjct: 721 PFDYKNQKN 729


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 560 FAISSSVRVPALFHQACLFCVGIREVAFLAYVCSIGDLVLVFVTA 426
           F ISSS+R P + H   L   G  +   +  +CS GDL  + + A
Sbjct: 406 FCISSSLRHPNVIHTLDLIQDGKGDYCEVMELCSGGDLYTLIMAA 450


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 387 VPVIKNEMYYGDNGSYKYEYQIADGTHVGEEGYFTNP 497
           VP+  +   YG + SY YE  I + T+  +  Y  +P
Sbjct: 272 VPLPSSTNTYGPSNSYGYEININESTNHVDSSYLPHP 308


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +3

Query: 207 PQNTWNAPPKPIQPINTY--PQNNYAPPQNSYYPQNTYAPP 323
           P + +N    P Q    Y  PQ++YAPP  S  P+ +Y  P
Sbjct: 99  PSSNYNTAKPPYQTSQFYARPQSSYAPPP-SGRPRISYPYP 138



 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = +3

Query: 192 PIQWKPQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAPPQNTY 335
           P   +P N+W          +  P +NY   +  Y     YA PQ++Y
Sbjct: 77  PTSQRP-NSWQPGNASTMYASPPPSSNYNTAKPPYQTSQFYARPQSSY 123


>SPAC57A10.08c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 364

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = +2

Query: 218 VERSTQADPADKHLSPKQLRPPSKLILSSEYICSSSKHISSHLEHAFI 361
           +ER ++ +   K+LSP      SK+ +SS+Y   +   ++ +L    I
Sbjct: 43  IERRSKRESLSKNLSPNDNSHNSKIDISSDYQLLNEYKVAYYLRPGII 90


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 323 SKHISSHLEHAFISDFDYNNSRSSDQERNVL 415
           +K  +SH+ +AFIS FD+   R  +  R +L
Sbjct: 605 TKGSNSHILNAFISAFDFKGKRIDEALRLLL 635


>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 249 INTYPQNNYAPPQNSYYPQNTYA 317
           IN  P+  + PP +SY+P+  +A
Sbjct: 60  INNDPKVRFLPPVDSYHPKRNHA 82


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
 Frame = +3

Query: 225 APPKPIQPINTYP--QNNYAPPQNSYYPQNTYAPPQNTY 335
           A P P  P   YP   ++ APP    Y Q  Y P Q  Y
Sbjct: 204 AQPPPPPPQQNYPPAASSSAPPMQ--YQQTAYPPQQAPY 240


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 476 LAYVCSIGDLVLVFVTAIITIIHF 405
           + ++ +IGD   +F T I+T + F
Sbjct: 472 IGFITAIGDFAWIFTTIIVTTVAF 495


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +3

Query: 189 PPIQWKPQNTWNAPPKPIQPINTYPQNN 272
           PP      +  N+PP+PI P++  P  N
Sbjct: 258 PPSNGTVSSPPNSPPRPIAPVSMNPAIN 285


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 207 PQNTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNTYAP 320
           P++T + P K I  +    QN+Y P   S+Y Q+   P
Sbjct: 370 PESTASTPKKRILHV----QNDYVPHYRSFYQQHEQNP 403


>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 392

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -2

Query: 575 VDGVNFAISSSV-RVPALFHQACLFCVGI 492
           V G  F + SS+  +PA++ +  L+CVGI
Sbjct: 352 VSGTFFGVVSSLFLLPAMWKRRSLYCVGI 380


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +3

Query: 213 NTWNAPPKPIQPINTYPQNNYAPPQNSYYPQNT---YAPPQ 326
           N +N    P  P NTY + NY+ P N     NT   Y PP+
Sbjct: 6   NPYNGGQYP--PYNTYTRPNYS-PNNGSQSNNTVHQYQPPR 43


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,079
Number of Sequences: 5004
Number of extensions: 62201
Number of successful extensions: 242
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)